View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15655_low_41 (Length: 273)

Name: NF15655_low_41
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15655_low_41
NF15655_low_41
[»] chr4 (11 HSPs)
chr4 (69-200)||(23598489-23598620)
chr4 (211-273)||(4896388-4896450)
chr4 (212-273)||(51296066-51296127)
chr4 (211-273)||(42915107-42915169)
chr4 (212-270)||(37249033-37249091)
chr4 (216-273)||(23690352-23690409)
chr4 (51-110)||(24564294-24564353)
chr4 (209-273)||(51389437-51389501)
chr4 (211-270)||(1033272-1033331)
chr4 (210-273)||(31275267-31275330)
chr4 (212-269)||(15596521-15596578)
[»] chr7 (4 HSPs)
chr7 (211-273)||(48866818-48866880)
chr7 (209-273)||(30180628-30180692)
chr7 (212-273)||(37856070-37856131)
chr7 (212-269)||(10591277-10591334)
[»] chr6 (5 HSPs)
chr6 (211-273)||(1897807-1897869)
chr6 (211-273)||(2582783-2582845)
chr6 (211-273)||(30906551-30906613)
chr6 (212-270)||(32853033-32853091)
chr6 (217-270)||(32457146-32457199)
[»] chr3 (5 HSPs)
chr3 (210-273)||(47849791-47849854)
chr3 (212-270)||(34733183-34733241)
chr3 (212-273)||(29706024-29706085)
chr3 (211-270)||(52727336-52727395)
chr3 (206-269)||(20380772-20380835)
[»] scaffold0057 (1 HSPs)
scaffold0057 (212-273)||(39000-39061)
[»] chr8 (7 HSPs)
chr8 (212-273)||(5359459-5359520)
chr8 (210-273)||(37524315-37524378)
chr8 (211-266)||(26294304-26294359)
chr8 (211-266)||(26307561-26307616)
chr8 (211-273)||(23258153-23258215)
chr8 (212-273)||(7678853-7678914)
chr8 (209-273)||(21273596-21273660)
[»] scaffold0026 (1 HSPs)
scaffold0026 (207-273)||(113746-113812)
[»] chr5 (8 HSPs)
chr5 (215-273)||(28811549-28811607)
chr5 (208-273)||(11306817-11306882)
chr5 (211-270)||(2117528-2117587)
chr5 (211-273)||(20719903-20719965)
chr5 (206-273)||(39595395-39595462)
chr5 (223-273)||(34767317-34767367)
chr5 (212-273)||(24431507-24431568)
chr5 (213-273)||(125213-125273)
[»] chr2 (10 HSPs)
chr2 (212-273)||(29795557-29795618)
chr2 (210-273)||(39454134-39454197)
chr2 (216-273)||(6365307-6365364)
chr2 (212-273)||(34442234-34442295)
chr2 (210-273)||(11164263-11164326)
chr2 (218-273)||(36435802-36435857)
chr2 (211-273)||(3091862-3091924)
chr2 (211-273)||(36133095-36133157)
chr2 (215-273)||(12600169-12600227)
chr2 (211-273)||(13711182-13711244)
[»] scaffold0076 (1 HSPs)
scaffold0076 (233-273)||(11313-11353)
[»] chr1 (2 HSPs)
chr1 (210-273)||(46948100-46948163)
chr1 (211-273)||(49453601-49453660)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 23598620 - 23598489
Alignment:
Q  69 tgtttgaacgagtcaagagtacaaaa-tacttacagtagcttcactttgtctctcttgaccaattaaccatcaaacatcattttaaaacatcactggact 167  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23598620 tgtttgaacgagtca-gagtacaaaaatacttacagtagcttcactttgtctctcttgaccaattaaccatcaaacatcattttaaaacatcactggact 23598522  T
Q  168 tgggtaacctgtttctcttcttatttttctacc 200  Q
    |||||||||||||||||||||||||||||||||    
T  23598521 tgggtaacctgtttctcttcttatttttctacc 23598489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 4896388 - 4896450
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4896388 agagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctt 4896450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 51296066 - 51296127
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  51296066 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaatctcttttttctctctt 51296127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 42915107 - 42915169
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||| |||||||| |||||| | |||||||| |||||||||||||||    
T  42915107 agagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctctt 42915169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 37249091 - 37249033
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    ||||| |||| |||||||||||||||||||||||| | | || ||||||||||||||||    
T  37249091 gagtaatgatatttgaacatctatttgaaacaacttttgagataacctcttttttctct 37249033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 23690409 - 23690352
Alignment:
Q  216 agtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||| |||||||||||||||||||||| | | |||||||  |||||||||||||||    
T  23690409 agtgatatttgaacatctatttgaaacaatttttgtgacaatatcttttttctctctt 23690352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 24564353 - 24564294
Alignment:
Q  51 atttctaatgttgaaaattgtttgaacgagtcaagagtac-aaaatacttacagtagcttc 110  Q
    ||||||| |||||||||||||||||| ||||| ||||||| |||||||||| |||||||||    
T  24564353 atttctagtgttgaaaattgtttgaatgagtc-agagtactaaaatacttatagtagcttc 24564294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 51389501 - 51389437
Alignment:
Q  209 ttagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||| |||||| |||||||| | |||||| |||||| | |||||||| |||||||||||||||    
T  51389501 ttagagcagtgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctctt 51389437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 1033331 - 1033272
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    ||||||||||| |||||||| | |||| |||||||| | |||||||| ||||||||||||    
T  1033331 agagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctct 1033272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 31275330 - 31275267
Alignment:
Q  210 tagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||| |||||||| | |||||| |||||| | |||||||  |||||||||||||||    
T  31275330 tagagtagtgatatttgaacaaccatttgatacaacttttgtgacaatttcttttttctctctt 31275267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 15596578 - 15596521
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctc 269  Q
    |||||||||| |||||||| | |||| |||||||| | |||||||| |||||||||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctc 15596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 48866818 - 48866880
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  48866818 agagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctt 48866880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 30180692 - 30180628
Alignment:
Q  209 ttagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||||| |||||||||||||||||||||| | | | ||||||||||||||||||||||    
T  30180692 ttagagtagtgatatttgaacatctatttgaaacaatttttgcgacaacctcttttttctctctt 30180628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 37856070 - 37856131
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| ||| |||||||||||||||||||| | |||| || ||||||||||||||||    
T  37856070 gagtagtgatatttaaacatctatttgaaacaacttttgtgataatctcttttttctctctt 37856131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 10591334 - 10591277
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctc 269  Q
    |||||||||| |||||||| | |||||| |||||| | |||||||| |||||||||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaacttttgtgacaacttcttttttctc 10591277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 1897869 - 1897807
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  1897869 agagtagtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctt 1897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 2582845 - 2582783
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  2582845 agagtggtgatatttgaacatctatttgaaacaacttttgtgacaacctcttttttctctctt 2582783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 30906551 - 30906613
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||||| ||||||||||||| |  ||||||  |||||| ||||||||    
T  30906551 agagtagtgatatttgaacatccatttgaaacaactcttatgacaatttcttttctctctctt 30906613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 32853033 - 32853091
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    |||||||||| |||||||| |||||||| |||| | | |||||||| ||||||||||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaatttttgtgacaacttcttttttctct 32853091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 32457146 - 32457199
Alignment:
Q  217 gtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    ||||| ||| |||||||||||||||||| | | |||| ||||||||||||||||    
T  32457146 gtgatatttaaacatctatttgaaacaaattttgtgataacctcttttttctct 32457199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 47849854 - 47849791
Alignment:
Q  210 tagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||||||    
T  47849854 tagagtagtgatatttgaacatctatttgaaacaactcttgtgacagcctcttttttctctctt 47849791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 34733183 - 34733241
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    |||||||||| |||||||||||||||||||||||| | | ||||| |||||||||||||    
T  34733183 gagtagtgatatttgaacatctatttgaaacaacttttgagacaatctcttttttctct 34733241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 29706085 - 29706024
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||| |||||||| |||||| | |||||||| |||||||||||||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctctt 29706024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 52727336 - 52727395
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    ||||||||||| ||| |||||||||||||||||| | | ||||||| |||||||||||||    
T  52727336 agagtagtgatatttaaacatctatttgaaacaatttttgtgacaatctcttttttctct 52727395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 20380772 - 20380835
Alignment:
Q  206 aaattagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctc 269  Q
    |||| ||||||||||| |||||||| | |||| |||||||| | |||||||| |||||||||||    
T  20380772 aaataagagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctc 20380835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 39061 - 39000
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  39061 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaatctcttttttctctctt 39000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 5359520 - 5359459
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  5359520 gagtagtgatatttgaacatctatttgaaacaacttttgtgacaatctcttttttctctctt 5359459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 37524315 - 37524378
Alignment:
Q  210 tagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||| ||||||||||||||||||| |||  | ||||||||||||||||||||||||    
T  37524315 tagagtagtgatatttgaacatctatttgaaataacctttgtgacaacctcttttttctctctt 37524378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 26294359 - 26294304
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctctttttt 266  Q
    ||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||    
T  26294359 agagtagtgatatttgaacatatatttgaaacaacttttgtgacaacctctttttt 26294304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 26307616 - 26307561
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctctttttt 266  Q
    ||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||    
T  26307616 agagtagtgatatttgaacatatatttgaaacaacttttgtgacaacctctttttt 26307561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 23258215 - 23258153
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||| | ||||||||||| | | |||||||| |||||||||||||||    
T  23258215 agagtagtgatatttgaacaaccatttgaaacaatttttgtgacaacttcttttttctctctt 23258153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 7678914 - 7678853
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||| |||| |||||||| |||||||| |||||| | || ||||| |||||||||||||||    
T  7678914 gagtaatgatatttgaacaactatttgatacaacttttgtaacaacttcttttttctctctt 7678853  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 21273596 - 21273660
Alignment:
Q  209 ttagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||||| |||||||| |||||| | |||||| | |||||||| | | |||||||||||    
T  21273596 ttagagtagtgatatttgaacaactatttcatacaacttttgtgacaacttttcttttctctctt 21273660  T

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Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 113812 - 113746
Alignment:
Q  207 aattagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||||||| ||| |||||||||||||||||| | | |||||||||||| |||||||||||    
T  113812 aattagagtagtgatatttaaacatctatttgaaacaatttttgtgacaacctctcttttctctctt 113746  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 28811607 - 28811549
Alignment:
Q  215 tagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  28811607 tagtgatatttgaatatctatttgaaacaacttttgtgacaacctcttttttctctctt 28811549  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 11306882 - 11306817
Alignment:
Q  208 attagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||||| |||||||| |||||||| |||||| | | |||||| |||||||||||||||    
T  11306882 attagagtagtgatatttgaacaactatttgatacaacttttgagacaacttcttttttctctctt 11306817  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 2117528 - 2117587
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctct 270  Q
    ||||||||||| |||||||| |||||||| |||||| | |||||||| ||||||||||||    
T  2117528 agagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctct 2117587  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 20719903 - 20719965
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||||| |||||| |||||| | |||||||| |||||| ||||||||    
T  20719903 agagtagtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctctt 20719965  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 39595462 - 39595395
Alignment:
Q  206 aaattagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||| ||||| |||| |||||||| | |||||| |||||| | |||||||| |||||||||||||||    
T  39595462 aaatttgagtaatgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctctt 39595395  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 34767317 - 34767367
Alignment:
Q  223 tttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||||||||| |||||| | |||||||| |||||| ||||||||    
T  34767317 tttgaacatctatttgagacaactcttgtgacaacttcttttctctctctt 34767367  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 24431507 - 24431568
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||| | |||||| |||||| | |||||||| || ||||||||||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctctctt 24431568  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 125273 - 125213
Alignment:
Q  213 agtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||| |||||||| | |||||| |||||| | | |||||| |||||||||||||||    
T  125273 agtagtgatatttgaacaaccatttgatacaacttttgcgacaacttcttttttctctctt 125213  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 29795618 - 29795557
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||| ||||||||||||||    
T  29795618 gagtagtgatatttgaacatcaatttgaaacaacttttgtgacaaccacttttttctctctt 29795557  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 39454134 - 39454197
Alignment:
Q  210 tagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||| |||||||||||||||||||||| | | | ||||| ||||||||||||||||    
T  39454134 tagagtagtgatatttgaacatctatttgaaacaagttttgagacaatctcttttttctctctt 39454197  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 6365364 - 6365307
Alignment:
Q  216 agtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||| ||||||||||||||| |||||||| |  |||||||||||||||||||||||    
T  6365364 agtgatatttgaacatctatttaaaacaacttttatgacaacctcttttttctctctt 6365307  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 34442295 - 34442234
Alignment:
Q  212 gagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||| |||||||||||||||||||||| | |  |||||||||||||| ||||||||    
T  34442295 gagtagtgatatttgaacatctatttgaaacaatttttctgacaacctcttttctctctctt 34442234  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 11164263 - 11164326
Alignment:
Q  210 tagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||| ||||| |||||||| |||||||| |||||| | |||||||| |||||||||||||||    
T  11164263 tagagtggtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctctt 11164326  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 36435857 - 36435802
Alignment:
Q  218 tgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||    
T  36435857 tgatatttgaacatttatttgaaacaacttttgtgacaacctcttttctctctctt 36435802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 3091924 - 3091862
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| ||||||||  ||||||| |||||| | |||||||| |||||||||||||||    
T  3091924 agagtagtgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctctctt 3091862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 36133157 - 36133095
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||| |||||| | |||||| | |||||||| |||||||||||||||    
T  36133157 agagtagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctctt 36133095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 12600227 - 12600169
Alignment:
Q  215 tagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||| |||||||| |||||| | |||||| | |||||||| |||||||||||||||    
T  12600227 tagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctctctt 12600169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 13711244 - 13711182
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||| ||||||   |||||| | |||||||| |||||||||||||||    
T  13711244 agagtagtgatatttgaacaactattttgtacaacttttgtgacaacttcttttttctctctt 13711182  T

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Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 11353 - 11313
Alignment:
Q  233 tatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  11353 tatttgaaacaacttttgtgacaacctcttttttctctctt 11313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 46948163 - 46948100
Alignment:
Q  210 tagagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    |||||||||||| |||||||||| |||||| |||||| | |||||||| |||||| ||| ||||    
T  46948163 tagagtagtgatatttgaacatccatttgagacaactcttgtgacaacttcttttctctatctt 46948100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 49453660 - 49453601
Alignment:
Q  211 agagtagtgatctttgaacatctatttgaaacaactgtagtgacaacctcttttttctctctt 273  Q
    ||||||||||| |||||||| |||||||| |||||| | |||||||   ||||||||||||||    
T  49453660 agagtagtgatatttgaacaactatttgatacaacttttgtgacaa---cttttttctctctt 49453601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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