View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_42 (Length: 267)
Name: NF15655_low_42
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 480378 - 480134
Alignment:
| Q |
18 |
ccaaaaccttaacgcatatatatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagcaacacagtttcctaa |
117 |
Q |
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| T |
480378 |
ccaaaaccttaacgcatatatatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagcaacacagtttcctaa |
480279 |
T |
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| Q |
118 |
aagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgcatttattagtagctttgga |
217 |
Q |
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| T |
480278 |
aagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgcatttattagtagctttgga |
480179 |
T |
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| Q |
218 |
cccttcaacaatgcaatagatactgctccacttattcatctcact |
262 |
Q |
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| T |
480178 |
cccttcaacaatgcaatagatactgctccacttatacatatcact |
480134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 474977 - 474801
Alignment:
| Q |
72 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccat |
171 |
Q |
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| T |
474977 |
atacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggccat |
474878 |
T |
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| Q |
172 |
gattgactttgaag---ttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccac |
248 |
Q |
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| T |
474877 |
gatagattttgtaggtagtatgttttctgcat---ttagtagctttggacccttcaacaatgctatagacaatgctccac |
474801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 467943 - 467764
Alignment:
| Q |
72 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca-ttactagagag--tcttgc |
168 |
Q |
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|||||||||||||||| ||||| |||||||||| | ||| | |||| | ||||||||||||||||||||||||||| || ||| || | | || |
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| T |
467943 |
atacctgcaaaatgagaaaaattccccaagcaacagtgcatccgagaagagacagacatccaagcaaccaattctcatcacttcctaataaggttgtggc |
467844 |
T |
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| Q |
169 |
catgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccactta |
251 |
Q |
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| T |
467843 |
catgattgattttgaaagtatcttatctgcatttagtagt---tttggacccttcaacaatgcaattgacactgctccactta |
467764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 251
Target Start/End: Original strand, 27491400 - 27491576
Alignment:
| Q |
72 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca-ttactagagagtcttgcc- |
169 |
Q |
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||||||||||||| ||||||| |||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||| || ||| || || |||| |
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| T |
27491400 |
atacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttccta-ag-gttgtgcca |
27491497 |
T |
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| Q |
170 |
atgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccactta |
251 |
Q |
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| T |
27491498 |
atgattgattttgaagttatgctttctgcat---ttagcagctttggacccttcaatagtgcaatgaacactgctccactta |
27491576 |
T |
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