View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15655_low_47 (Length: 250)
Name: NF15655_low_47
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 23707133 - 23706934
Alignment:
| Q |
4 |
agatgcttttgttagttgcaacgccaattacatttgtttggggaagggaaacattccaaactatgtcatatacaaatacattgagcattatccgaatcaa |
103 |
Q |
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| T |
23707133 |
agatgcttttgtttgttgcaacgccaattacatttgttttgggaagggaaacattccaaactatgtcatatacagatacattgagcattatccgaatcaa |
23707034 |
T |
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| Q |
104 |
aaatcgtgttttgagtatcctaattctgaagatggatgcaccaatttactttgccactgtaagatatttaagggaaaggtaagctatctggaattttgga |
203 |
Q |
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| T |
23707033 |
aaattgtgttttgagtatcctaattctgaagatggatgcaccaatttactttgccactgtaagatatttaagggaaaggtaagctatctggaattttgga |
23706934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 40818607 - 40818809
Alignment:
| Q |
1 |
ttcagatgcttttgttagttgcaacgccaattacatttgtttggggaagggaaacattccaaactatgtcatatacaaatacattgagcattatccgaat |
100 |
Q |
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| T |
40818607 |
ttcagatgcttttgtttgttgcaacgccaattacatttattttgggaagggaaacattccaaactatgtcatatacagatacattgagcattatccgact |
40818706 |
T |
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| Q |
101 |
caaaaatcgtgttttgagtatcctaattctgaagatggatgcaccaatttactttgccactgtaagatatttaagggaaaggtaagctatctggaatttt |
200 |
Q |
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| T |
40818707 |
caaaaatcgtgttttgagtatcctaattttgaagatggatgcaccaatttactttgccactgtaagatatttaagggaaaggtaagctatctggaatttt |
40818806 |
T |
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| Q |
201 |
gga |
203 |
Q |
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||| |
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| T |
40818807 |
gga |
40818809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 31750313 - 31750449
Alignment:
| Q |
49 |
gggaaacattccaaactatgtcatatacaaatacattgagcattatccgaatcaaaaatcgtgttttgagtatcctaattctgaagatggatgcaccaat |
148 |
Q |
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||||||||||||||| | ||| ||||||| | |||||||||||||||||||| ||| |||| ||| | || |||||||| ||||| ||||||||||| |
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| T |
31750313 |
gggaaacattccaaattctgtaatatacagaaacattgagcattatccgaatgcaaa-tcgtatttccggaattctaattctaaagattgatgcaccaat |
31750411 |
T |
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| Q |
149 |
ttactttgccactgtaagatatttaagggaaaggtaag |
186 |
Q |
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||||||||||| || ||| |||||||| |||||||||| |
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| T |
31750412 |
ttactttgccaatgcaagctatttaagagaaaggtaag |
31750449 |
T |
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