View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15655_low_50 (Length: 224)
Name: NF15655_low_50
Description: NF15655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15655_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41574116 - 41574327
Alignment:
| Q |
1 |
tcataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattccttaaaataatgtcttccactatcatcattgagtgtgtcct |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41574116 |
tcataaaatgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattctttaaaataatgtcttccactatcatcattgagtgtgtcct |
41574215 |
T |
|
| Q |
101 |
gcgcaccatagaaaccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgcttgtgctccaacctctcctggtgaaggtggaggaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41574216 |
gcgcaccatagaaaccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgcttgtgctccaacctctcctggtgaaggtggaggaga |
41574315 |
T |
|
| Q |
201 |
agtgttctgttc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41574316 |
agtgttctgttc |
41574327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41565915 - 41565988
Alignment:
| Q |
1 |
tcataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattccttaaaataatgtct |
74 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41565915 |
tcataaagtgatcaaccatttccaaatatgaaatcaatagatccttggatgaaacattctttaaaataatgtct |
41565988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 41435868 - 41435702
Alignment:
| Q |
2 |
cataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattccttaaaataatgtcttccactatcatcattgagtgtgtcctg |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||| || ||||||| ||||||||||| |||||||||| ||| || ||||||| ||||| || | |
|
|
| T |
41435868 |
cataaagtgatctaccatttacaaatatgaaatcgatagatccttcgatgaaacattctttaaaataatatctcccttgatcatcaagtagtgtatcttt |
41435769 |
T |
|
| Q |
102 |
cgcaccatagaaaccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgcttgt |
168 |
Q |
| |
|
|||| ||| || ||||||| ||| ||||| |||||||||| | |||| || || ||||||| |||| |
|
|
| T |
41435768 |
tgcactataaaacccacatcaataaaatgcagcttgatcactgttaacacttagcgccactgtttgt |
41435702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 41566014 - 41566063
Alignment:
| Q |
115 |
ccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
41566014 |
ccacatccatagaatgcggcttgatcaccgttaactcttagcgccactgc |
41566063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36815403 - 36815354
Alignment:
| Q |
1 |
tcataaagtgatctagcatttccaaatataaaatcaatggatccttgaat |
50 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36815403 |
tcatagagtgaccttgcattgccaaatataaaatcaatggatccttgaat |
36815354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University