View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15656_high_12 (Length: 294)
Name: NF15656_high_12
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15656_high_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 5686099 - 5685851
Alignment:
| Q |
45 |
atataaaacatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattgacatggatgcatagtaacactatcatt |
144 |
Q |
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| T |
5686099 |
atataaaatatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattcacatggatgcatagtagcactatcatt |
5686000 |
T |
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| Q |
145 |
gtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaactt |
244 |
Q |
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| T |
5685999 |
gtacaacataa-tataccactctttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaactt |
5685901 |
T |
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| Q |
245 |
ggcccagacatatagtcttcgctcttcagcaacttttgttcaagtattga |
294 |
Q |
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| T |
5685900 |
ggcccagacatatagtcttcactcttcagcaacttttgttcaagtattga |
5685851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 5697910 - 5697709
Alignment:
| Q |
16 |
aatatcaaggattaaggttgtgcttctaaatataaaacatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5697910 |
aatatcaaggattaaggttgtgcttctaaatataaaacatggtacaattttgtccaatataaatccaaaccactcatttccaattatcatctttcattat |
5697811 |
T |
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| Q |
116 |
tgacatggatgcatagtaacactatcattgtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacaca |
215 |
Q |
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| T |
5697810 |
tcacatggatgcatagtaacactatcattgtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacaca |
5697711 |
T |
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| Q |
216 |
tt |
217 |
Q |
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| T |
5697710 |
tt |
5697709 |
T |
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