View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15656_high_2 (Length: 523)
Name: NF15656_high_2
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15656_high_2 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 384 - 523
Target Start/End: Original strand, 15114560 - 15114699
Alignment:
| Q |
384 |
gagatcatgtcatgcactattcttataatttggtttatcaattttgattttctctattcaatagaaaattttaactaattaaacaaatatgattttggtt |
483 |
Q |
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| T |
15114560 |
gagatcatgtcatgcactattcttataatttggtttatcaattttgattttctctattcaatagaaaattttaactaattaaacaaatatgattttggtt |
15114659 |
T |
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| Q |
484 |
atgaagtctactacgatatctttttcttctccctatcgag |
523 |
Q |
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| T |
15114660 |
atgaaggctactacgatatctttttcttctcccaatcgag |
15114699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 15113455 - 15113584
Alignment:
| Q |
19 |
agaaaagaatttgtgatgtttcttgtataatatattcattgtttatatactata--ttcattatgagtcgccccatagaaaggtgaaccaatgtgcagac |
116 |
Q |
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| T |
15113455 |
agaaaagaatttgtgaagtttcttgtataatatattcattgtttatatactatatattcattatgagtcgccccatagaaaggggaaccaatgtgcagac |
15113554 |
T |
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| Q |
117 |
ttcatgacaaagctggaagctatgccaatg |
146 |
Q |
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| T |
15113555 |
ttcatgacaaagctggaagctatgccaatg |
15113584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 15114265 - 15114341
Alignment:
| Q |
243 |
tatgggaccagagctaacagatacgaaaacctagtaatacctcaccatcatcgcttatagaaccatatctgcaacac |
319 |
Q |
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| T |
15114265 |
tatgggaccagagctaactgatacgaaaacctagtaatacctcaccattatcgcttatagaaccatatctgcaacac |
15114341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 15113579 - 15113731
Alignment:
| Q |
104 |
ccaatgtgcagacttcatgacaaagctggaagctatgccaatggcactttttc-----------------ctgtcatttatatttgtaaccnnnnnnnca |
186 |
Q |
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| T |
15113579 |
ccaatgtgcagacttcatgacaaagctggaagctatgccaatggcactttttctgttttgtttttttttcctgtcatttatatttgtaaccaaaaaaaca |
15113678 |
T |
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| Q |
187 |
attatttgttggattatgcggctctcattcaattccttcatctatgagctatt |
239 |
Q |
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| T |
15113679 |
attatttgttggattatgtggctctcattcaattccttcatctataagctatt |
15113731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 15242099 - 15242054
Alignment:
| Q |
192 |
ttgttggattatgcggctctcattcaattccttcatctatgagcta |
237 |
Q |
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| T |
15242099 |
ttgttggattatgtggttctcattcaattccttcatctataagcta |
15242054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 3073362 - 3073317
Alignment:
| Q |
192 |
ttgttggattatgcggctctcattcaattccttcatctatgagcta |
237 |
Q |
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| T |
3073362 |
ttgttggattatgtggctctcattcaattacttcatctataagcta |
3073317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 29470467 - 29470511
Alignment:
| Q |
193 |
tgttggattatgcggctctcattcaattccttcatctatgagcta |
237 |
Q |
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| T |
29470467 |
tgttggattatgtggctctcattcaattacttcatctataagcta |
29470511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 3076858 - 3076820
Alignment:
| Q |
193 |
tgttggattatgcggctctcattcaattccttcatctat |
231 |
Q |
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| T |
3076858 |
tgttggattatgtggctctcattcaattacttcatctat |
3076820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 8565399 - 8565354
Alignment:
| Q |
192 |
ttgttggattatgcggctctcattcaattccttcatctatgagcta |
237 |
Q |
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| T |
8565399 |
ttgttggattatgtggctctcattcaattacttcatctataagcta |
8565354 |
T |
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Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 45974 - 46035
Alignment:
| Q |
348 |
gcttgttcaacaacaacgatg---aataataacttggttgagatcatgtcat-gcactattc |
405 |
Q |
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| T |
45974 |
gcttgttcaacaacaacgatgaataataataacttagttgaaatcatgtcatggcactattc |
46035 |
T |
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