View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15656_high_5 (Length: 442)
Name: NF15656_high_5
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15656_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 42974641 - 42974230
Alignment:
| Q |
15 |
actaggtagctaatttagcaacctaatctcaagctaagagcagctttaacatctaatctccatgcaaacccaccacaatccattctccacacatcacaag |
114 |
Q |
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| T |
42974641 |
actaggtagctaatttagcaacctaatctcaagctaagagcagctttaacatctaatctccatgcaaacccaccacaatccattctccacacatcacaag |
42974542 |
T |
|
| Q |
115 |
gtaacgtaaacaaatttctctccctaccacacgcaaactgcacaaccctaaccctacacgtgaacgacggatacaaaaccacaccatttattttcatcac |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974541 |
gtaacgtaaacaaatttctctcccttccacacgcaaactgcacaaccctaaccctacacgtgaacgacggatacaaaaccacaccatttattttcatcac |
42974442 |
T |
|
| Q |
215 |
caacgctataactccatcacccatcatctccctgtaagcaccgtttgtccacgtcactctcccgtaaccgtccgatataaatcctggacacgtgtccacc |
314 |
Q |
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| T |
42974441 |
caacgctataactccatcacccatcatctccctgtaagcaccgtttgtccacgtcactctcccgtaaccgtccgatataaaccctggacacgtgtccacc |
42974342 |
T |
|
| Q |
315 |
atcagctttgcacttctctcttcatctgtattccctagtccctcaccctctacccacgcgtccgttacgcactctacagttaaccgcaccgtcaccggct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974341 |
atcagctttgcacttctctcttcatctgtattccctagtccctcaccctctacccatgcgtccgttacgcactctacagttaaccgcaccgtcaccggct |
42974242 |
T |
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| Q |
415 |
ccaccgtgctgt |
426 |
Q |
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| T |
42974241 |
ccaccgtgctgt |
42974230 |
T |
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Back To:
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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 8059530 - 8059463
Alignment:
| Q |
48 |
ctaagagcagctttaacatctaatctccatgcaaacccaccacaatccattctccacacatcacaagg |
115 |
Q |
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| T |
8059530 |
ctaagagcagctttaacatctaacctccatgcaaacccaccacactctaatctccaaacatcacaagg |
8059463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 34059447 - 34059385
Alignment:
| Q |
50 |
aagagcagctttaacatctaatctccatgcaaacccaccacaatccattctccacacatcaca |
112 |
Q |
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| T |
34059447 |
aagagcagcagtaacatctaatctccatgcaaaaccaccacagtccaatctccacgcatcaca |
34059385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 34059256 - 34059207
Alignment:
| Q |
262 |
tccacgtcactctcccgtaaccgtccgatataaatcctggacacgtgtcc |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
34059256 |
tccacgtcactctcccataaccgtccgatataaatccaggacacgcgtcc |
34059207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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