View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15656_low_10 (Length: 372)
Name: NF15656_low_10
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15656_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 37462267 - 37461926
Alignment:
| Q |
18 |
aagacagactaagatccttcctaatagcttcttgagttggagatgaatatccagcctgaaaaaacaaaataacaacaattccacagagaaattaaacaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37462267 |
aagacagactaagatccttcctaatagcttcttgagttggagatgaatatccagcctgaaaaaacaaaataacaacaattccaaagagaaattaaacaca |
37462168 |
T |
|
| Q |
118 |
tactctataaaactttctcaattaaactaccaagcaatcaagaatcttctaactgattttgatctaaaatagtgcttcttattgctgatttacagagaag |
217 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37462167 |
tactctataaaactttgtcaattaaattaccaagcaatcaagaatcttctaactgattttgatctaaaatagtgcttcttattgctgatttacagagaag |
37462068 |
T |
|
| Q |
218 |
taaagacttacacaggcaccaaattcataagaaccacaaactgcaatgaatgtggtgaagtaaaccatccatggatgatgatgatctttgtttgcatgga |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37462067 |
taaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaagtaaaccatccatggatgatgatgatctttgtttgcatgga |
37461968 |
T |
|
| Q |
318 |
caagttggttgttttgttcacctatcaatggttctcttattc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461967 |
caagttggttgttttgttcacctatcaatggttctcttattc |
37461926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 198 - 359
Target Start/End: Original strand, 37592198 - 37592363
Alignment:
| Q |
198 |
attgctgatttacagagaa----gtaaagacttacacaggcaccaaattcataagaaccacaaactgcaatgaatgtggtgaagtaaaccatccatggat |
293 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37592198 |
attgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataaagcatccatggat |
37592297 |
T |
|
| Q |
294 |
gatgatgatctttgtttgcatggacaagttggttgttttgttcacctatcaatggttctcttattc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
37592298 |
aatgatgatctttgtttgcatggacaagttggttgttgtgttcccctatcaatggttctctcattc |
37592363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 37592088 - 37592156
Alignment:
| Q |
18 |
aagacagactaagatccttcctaatagcttcttgagttggagatgaatatccagcctgaaaaaacaaaa |
86 |
Q |
| |
|
|||||||| |||||||| |||| ||||| ||||||| |||||||||||| |||| ||| |||||||||| |
|
|
| T |
37592088 |
aagacagattaagatccctcctgatagcatcttgagctggagatgaatacccagtctggaaaaacaaaa |
37592156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University