View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15656_low_12 (Length: 339)

Name: NF15656_low_12
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15656_low_12
NF15656_low_12
[»] chr4 (3 HSPs)
chr4 (19-330)||(35155062-35155374)
chr4 (19-325)||(35162091-35162395)
chr4 (89-218)||(15555767-15555896)
[»] chr8 (2 HSPs)
chr8 (19-305)||(9692887-9693170)
chr8 (19-319)||(9675865-9676163)
[»] chr3 (15 HSPs)
chr3 (82-270)||(5159982-5160166)
chr3 (171-301)||(47397645-47397771)
chr3 (82-234)||(5155984-5156136)
chr3 (82-218)||(46473684-46473820)
chr3 (71-202)||(45883958-45884089)
chr3 (82-209)||(45902718-45902845)
chr3 (82-218)||(46526658-46526795)
chr3 (161-308)||(46479459-46479602)
chr3 (82-273)||(51942834-51943021)
chr3 (171-235)||(4581745-4581809)
chr3 (160-231)||(46549299-46549370)
chr3 (161-235)||(46497683-46497757)
chr3 (171-204)||(46544226-46544259)
chr3 (19-51)||(46483972-46484004)
chr3 (164-204)||(46531688-46531728)
[»] chr7 (1 HSPs)
chr7 (88-230)||(17708016-17708158)
[»] chr2 (2 HSPs)
chr2 (161-233)||(20358869-20358941)
chr2 (161-234)||(20169345-20169418)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 35155374 - 35155062
Alignment:
Q  19 gactgagctgccattcagaaggtgaaaatcatattttt--gtcatatatttaggaaacggttgaatccatgctcctttaaaatacagtgcattaacaagg 116  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| || ||| ||||||||||||||| |||||||||||||||||||||||| ||| |    
T  35155374 gactgagctgccattcagaaggtgaaaatcatatttttttgtcatacatctagaaaacggttgaatccaagctcctttaaaatacagtgcattagcaaag 35155275  T
Q  117 acgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcactt 216  Q
    | ||||||||||||| ||| ||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  35155274 atgagtctggttaagttgttgaccgactcttgagcaacaacttttttaataaggccatttgtctcttttttagcccataaattcacttctttagtcactt 35155175  T
Q  217 cagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaatagatcaattgaattatcttcacaagtatttcaatagaagaaatcaactt 316  Q
    || |||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35155174 caatagccttcaaaaccatgtcaatcaaatttataaatcagttatgc-aatagatcaattgaattctcttcacaagtatttcaatagaagaaatcaactt 35155076  T
Q  317 tctgctagtataat 330  Q
    ||||||||| ||||    
T  35155075 tctgctagtctaat 35155062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 35162395 - 35162091
Alignment:
Q  19 gactgagctgccattcagaaggtgaaaatcatatttttgt--catatatttaggaaacggttgaatccatgctcctttaaaatacagtgcattaacaagg 116  Q
    ||||||||| ||||||||||||||||||||||| ||||||  |  ||| |||| ||| |    | ||||||||||||||||||||||||| ||| ||| |    
T  35162395 gactgagcttccattcagaaggtgaaaatcatagttttgtgtcgcatacttagaaaatgtactactccatgctcctttaaaatacagtgcgttagcaaag 35162296  T
Q  117 acgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcactt 216  Q
    |  |||||||||| | |||||||||||||||||| || || || ||||||| | |||||||| ||||||| ||||||||||||||||| |||||||||||    
T  35162295 ataagtctggttaggttgtcgactgacccttgaggaagaagttctttaataaggccatttgtttctttttcagcccataaattcacttctttagtcactt 35162196  T
Q  217 cagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaatagatcaattgaattatcttcacaagtatttcaatagaagaaatcaactt 316  Q
    || ||||||| |||||||||    |||||||||||||||||  |||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||    
T  35162195 caatagcctttaaaaccatg----tcaaatttacaaatcagtaatgcaaatagatcagttgaattcttttcaccagtatttcaatagaagaaatcaactt 35162100  T
Q  317 tctgctagt 325  Q
    |||||||||    
T  35162099 tctgctagt 35162091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 15555896 - 15555767
Alignment:
Q  89 tcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctctttttta 188  Q
    ||||||||| |||||||||||  ||| || ||||||||||||||||| ||| |||||| |   || ||||  ||||||| | ||||||||||| |||| |    
T  15555896 tcctttaaagtacagtgcatttgcaaagatgagtctggttaagctgttgaccgaccctggttgaataactcctttaataaggccatttgtctccttttca 15555797  T
Q  189 gcccataaattcacttatttagtcacttca 218  Q
     ||||| |||| ||||  || |||||||||    
T  15555796 acccatgaattgacttcattggtcacttca 15555767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 9692887 - 9693170
Alignment:
Q  19 gactgagctgccattcagaaggtgaaaatcatattt--ttgtcatatatttaggaaacggttgaatccatgctcctttaaaatacagtgcattaacaagg 116  Q
    |||||||||||||||| ||||||||||||||||||   ||||| |  |   |||||| || | | ||||||||||||||||||||| ||||||| ||| |    
T  9692887 gactgagctgccattcggaaggtgaaaatcatattcgcttgtcctccaagcaggaaaaggattactccatgctcctttaaaatacaatgcattagcaaag 9692986  T
Q  117 acgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcactt 216  Q
    | |||||||||||||||||| |||||| |||||| || || || ||||||| | |||| ||||||||||| ||||||||||||||||| |||||||||||    
T  9692987 atgagtctggttaagctgtcaactgacgcttgaggaagaatttctttaataaggccatatgtctctttttcagcccataaattcacttgtttagtcactt 9693086  T
Q  217 cagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaatagatcaattgaattatcttcacaagtatttcaatagaa 305  Q
    || ||||||| |||| |||    |||||||||| ||||||| ||||||||||||| | ||||||| | ||||||||||| |||||||||    
T  9693087 caatagcctttaaaa-cat----atcaaatttaaaaatcagttatgcaaatagattagttgaattcttttcacaagtatatcaatagaa 9693170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 9675865 - 9676163
Alignment:
Q  19 gactgagctgccattcagaaggtgaaaatcatattttt--gtcatatatttaggaaacggttgaatccatgctcctttaaaatacagtgcattaacaagg 116  Q
    ||||||||||||||||||||||||||||||||| ||||  ||  |||| | |  |||  | | || |||| ||||||||||||| ||||||||| ||| |    
T  9675865 gactgagctgccattcagaaggtgaaaatcatagttttcggtattataatcaaaaaattgatcaacccattctcctttaaaatatagtgcattagcaaag 9675964  T
Q  117 acgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcactt 216  Q
    | ||||||||||||| ||| ||| ||||||| || || || || ||||||| | || | ||| ||||||| ||||||||||||||| | |||||||||||    
T  9675965 atgagtctggttaagttgttgaccgacccttcaggaagaatttctttaataaggccgtatgtttctttttcagcccataaattcacctctttagtcactt 9676064  T
Q  217 cagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaatagatcaattgaattatcttcacaagtatttcaatagaagaaatcaactt 316  Q
    || ||||||| || |  ||    |||||||||| ||||||| ||| ||||||||||| ||||||| | |||||||||||||| ||| |||| || |||||    
T  9676065 caatagccttaaataaaat----atcaaatttaaaaatcagttattcaaatagatcagttgaattcttttcacaagtatttcgataaaagagattaactt 9676160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 82 - 270
Target Start/End: Complemental strand, 5160166 - 5159982
Alignment:
Q  82 tccatgctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctc 181  Q
    |||||||||||||||| || ||||||||| ||| || |||||||||||| || || ||||| | | ||| || || || ||||||| | |||||||||||    
T  5160166 tccatgctcctttaaagtagagtgcattagcaaagatgagtctggttaacctatcaactgatcttagaggaagaagttctttaataaggccatttgtctc 5160067  T
Q  182 ttttttagcccataaattcacttatttagtcacttcagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaataga 270  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||    |||||||||| ||||||  ||||||||||||    
T  5160066 tttttcagcccataaattcacttctttagtcacttcaatagccttcaaaacaat----atcaaatttaaaaatcaattatgcaaataga 5159982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 47397645 - 47397771
Alignment:
Q  171 ccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaataga 270  Q
    ||||||||||| ||||| ||||||||||| |||| ||||| |||||||  |||||| ||| ||||    |||||||||| ||||||| ||||||||||||    
T  47397645 ccatttgtctcatttttggcccataaatttacttctttagccacttcatcagcctttaaacccat----atcaaatttaaaaatcagttatgcaaataga 47397740  T
Q  271 tcaattgaattatcttcacaagtatttcaat 301  Q
    ||||||||||||| ||||||| | |||||||    
T  47397741 tcaattgaattattttcacaattctttcaat 47397771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 5156136 - 5155984
Alignment:
Q  82 tccatgctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctc 181  Q
    |||||||||||||||| || ||||||||| ||| || ||| | ||||||||| || ||||| | | ||| || || || ||||||| | |||||||||||    
T  5156136 tccatgctcctttaaagtagagtgcattagcaaagatgaggcgggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctc 5156037  T
Q  182 ttttttagcccataaattcacttatttagtcacttcagtagccttcaaaacca 234  Q
    ||||| ||||||||||||| ||| |||||||||||||  |||||| |||||||    
T  5156036 tttttcagcccataaattcccttctttagtcacttcaacagcctttaaaacca 5155984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 46473820 - 46473684
Alignment:
Q  82 tccatgctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctc 181  Q
    |||||| |||||||||||||| ||||||| ||| ||||||||||| |||| ||| || ||||||||||| || || || ||||||| | |||||||||||    
T  46473820 tccatgatcctttaaaatacaatgcattagcaaagacgagtctggataagttgttgattgacccttgaggaagaatttctttaataagaccatttgtctc 46473721  T
Q  182 ttttttagcccataaattcacttatttagtcacttca 218  Q
    ||||| ||||||||  |||||||  || |||||||||    
T  46473720 tttttcagcccatatgttcacttcattggtcacttca 46473684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 45883958 - 45884089
Alignment:
Q  71 aaacggttgaatccatgctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgt 170  Q
    |||||||||| |||||||||| ||||| |||| ||||||| |||  | ||||||||||||| |||  ||||||||| ||| || || || ||||||| |     
T  45883958 aaacggttgattccatgctcccttaaagtacaatgcattagcaaatatgagtctggttaagttgttaactgaccctggagaaagaatttctttaataaga 45884057  T
Q  171 ccatttgtctcttttttagcccataaattcac 202  Q
    |||||||||||||||| |||||||||||||||    
T  45884058 ccatttgtctctttttcagcccataaattcac 45884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 45902845 - 45902718
Alignment:
Q  82 tccatgctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctc 181  Q
    ||||||||||||||||||||| ||| ||| ||| || ||||||||||||  ||| ||| |||||| ||  || || ||  |||||| | |||||||||||    
T  45902845 tccatgctcctttaaaatacaatgcgttagcaaagatgagtctggttaatttgttgaccgaccctcgataaagaaattcattaataaggccatttgtctc 45902746  T
Q  182 ttttttagcccataaattcacttattta 209  Q
    ||||| ||||||||||||||||| ||||    
T  45902745 tttttcagcccataaattcactttttta 45902718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 46526658 - 46526795
Alignment:
Q  82 tccatgctcctttaaaa-tacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtct 180  Q
    ||||||||||||||||| |||||||| ||  ||| || ||||||||||||  | | ||||||  |||||| || || || | ||||| | ||||||||||    
T  46526658 tccatgctcctttaaaaatacagtgcgtttgcaaagatgagtctggttaatttattgactgaatcttgagaaagaagttctctaataaggccatttgtct 46526757  T
Q  181 cttttttagcccataaattcacttatttagtcacttca 218  Q
    |||||| ||||||||||||||||| |||| ||||||||    
T  46526758 ctttttcagcccataaattcacttctttaatcacttca 46526795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 46479602 - 46479459
Alignment:
Q  161 tttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaaccatgtgaatcaaatttacaaatcagcta 260  Q
    ||||||| | |||||||||||||||| ||||||| |||||||||  || |||||||||  |||||| ||||||||    |||||||||| ||||||  ||    
T  46479602 tttaataaggccatttgtctctttttcagcccatgaattcacttcattggtcacttcaacagcctttaaaaccat----atcaaatttaaaaatcaatta 46479507  T
Q  261 tgcaaatagatcaattgaattatcttcacaagtatttcaatagaagaa 308  Q
    |||| ||| || | |||| |  | |||||||||||| |||||||||||    
T  46479506 tgcatataaataagttgagtacttttcacaagtattgcaatagaagaa 46479459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 51943021 - 51942834
Alignment:
Q  82 tccatgctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctc 181  Q
    ||||||||||| |||| ||||  |||||| ||| || ||| || |||||||| || ||||| ||| ||| || || || ||||||| | |||||||||||    
T  51943021 tccatgctcctctaaagtacaacgcattagcaaagatgaggctagttaagctatcaactgatcctggaggaataagttctttaataaggccatttgtctc 51942922  T
Q  182 ttttttagcccataaattcacttatttagtcacttcagtagccttcaaaaccatgtgaatcaaatttacaaatcagctatgcaaatagatca 273  Q
    ||||| | ||||||  |||||||  |||  |||||| | |||||  ||||||||    |||||||||| ||||||  |||||||||||||||    
T  51942921 tttttcaacccatatgttcacttccttacgcacttctggagcctaaaaaaccat----atcaaatttaaaaatcaattatgcaaatagatca 51942834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 4581745 - 4581809
Alignment:
Q  171 ccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaaccat 235  Q
    |||||||||||||||| ||||||||||||||||| || |  |||||| |||||||| ||||||||    
T  4581745 ccatttgtctctttttcagcccataaattcacttcttgaagcacttcggtagcctttaaaaccat 4581809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 46549299 - 46549370
Alignment:
Q  160 ttttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaa 231  Q
    |||||||| | |||||||||||||||| ||||||||||||||||| ||| | ||||||| | ||||| ||||    
T  46549299 ttttaataagaccatttgtctctttttcagcccataaattcacttctttggccacttcacttgcctttaaaa 46549370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 46497757 - 46497683
Alignment:
Q  161 tttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaaccat 235  Q
    ||||||| | |||||||||||| ||| |||||||||||||||||  ||  ||||||||  |||||| ||||||||    
T  46497757 tttaataagaccatttgtctctctttcagcccataaattcacttcattgttcacttcaacagcctttaaaaccat 46497683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 46544259 - 46544226
Alignment:
Q  171 ccatttgtctcttttttagcccataaattcactt 204  Q
    |||||||||||||||| |||||||||||||||||    
T  46544259 ccatttgtctctttttcagcccataaattcactt 46544226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 46484004 - 46483972
Alignment:
Q  19 gactgagctgccattcagaaggtgaaaatcata 51  Q
    ||||||||||||||| |||||||||||||||||    
T  46484004 gactgagctgccattgagaaggtgaaaatcata 46483972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 46531728 - 46531688
Alignment:
Q  164 aatacgtccatttgtctcttttttagcccataaattcactt 204  Q
    ||||||||| |||||||||||||||||||||  ||||||||    
T  46531728 aatacgtccgtttgtctcttttttagcccatgcattcactt 46531688  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 17708158 - 17708016
Alignment:
Q  88 ctcctttaaaatacagtgcattaacaaggacgagtctggttaagctgtcgactgacccttgagcaacaacttttttaatacgtccatttgtctctttttt 187  Q
    ||||||| ||||| ||||||||| |||  | ||| |||||||||||||| |||||||  || | || ||  ||||||||| | || |||||||| ||||     
T  17708158 ctcctttgaaatatagtgcattagcaaatatgaggctggttaagctgtcaactgacctgtgtggaagaagatttttaataagcccttttgtctccttttc 17708059  T
Q  188 agcccataaattcacttatttagtcacttcagtagccttcaaa 230  Q
    ||||||||||||||||| ||   ||||||||  ||||||||||    
T  17708058 agcccataaattcacttcttctctcacttcatcagccttcaaa 17708016  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 20358941 - 20358869
Alignment:
Q  161 tttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaacc 233  Q
    ||||||| | ||| |||||||||||| || |||||||||||||| ||| |||||||||  | |||||||||||    
T  20358941 tttaataaggccaattgtctctttttcagaccataaattcactttttttgtcacttcaacaaccttcaaaacc 20358869  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 20169345 - 20169418
Alignment:
Q  161 tttaatacgtccatttgtctcttttttagcccataaattcacttatttagtcacttcagtagccttcaaaacca 234  Q
    ||||||| | ||| ||||||||||||  | |||||||||||||| ||| |||||||||  | ||||||||||||    
T  20169345 tttaataaggccaattgtctctttttccgaccataaattcactttttttgtcacttcaacaaccttcaaaacca 20169418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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