View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15656_low_14 (Length: 303)

Name: NF15656_low_14
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15656_low_14
NF15656_low_14
[»] chr6 (17 HSPs)
chr6 (1-287)||(5685400-5685682)
chr6 (213-288)||(14936452-14936527)
chr6 (214-285)||(11572141-11572212)
chr6 (215-285)||(3788100-3788170)
chr6 (215-285)||(6330178-6330248)
chr6 (234-287)||(4251370-4251423)
chr6 (217-262)||(8417879-8417924)
chr6 (216-285)||(13853591-13853660)
chr6 (217-285)||(8099593-8099661)
chr6 (217-285)||(9644759-9644827)
chr6 (217-285)||(9650776-9650844)
chr6 (217-285)||(26602386-26602454)
chr6 (218-285)||(2830398-2830465)
chr6 (218-285)||(8382969-8383036)
chr6 (215-285)||(6068629-6068699)
chr6 (216-285)||(35030999-35031068)
chr6 (210-274)||(28747126-28747190)
[»] chr7 (13 HSPs)
chr7 (217-287)||(28469542-28469612)
chr7 (214-274)||(7661150-7661210)
chr7 (218-274)||(7269479-7269535)
chr7 (217-285)||(38063912-38063980)
chr7 (214-285)||(9268819-9268890)
chr7 (217-285)||(1738446-1738514)
chr7 (217-285)||(7240812-7240880)
chr7 (217-285)||(7482288-7482356)
chr7 (218-285)||(46840923-46840990)
chr7 (210-251)||(13807354-13807395)
chr7 (218-274)||(22285773-22285829)
chr7 (218-274)||(36016196-36016252)
chr7 (217-285)||(36583458-36583526)
[»] chr2 (25 HSPs)
chr2 (229-287)||(13952545-13952603)
chr2 (229-287)||(14093752-14093810)
chr2 (217-274)||(23227271-23227328)
chr2 (217-285)||(41492895-41492963)
chr2 (215-285)||(44398749-44398819)
chr2 (233-286)||(3243129-3243182)
chr2 (225-262)||(23986864-23986901)
chr2 (216-285)||(38917520-38917589)
chr2 (217-285)||(3055621-3055689)
chr2 (217-285)||(6648518-6648586)
chr2 (217-285)||(9047754-9047822)
chr2 (217-285)||(37990012-37990080)
chr2 (217-285)||(41478638-41478706)
chr2 (218-285)||(12337937-12338004)
chr2 (218-285)||(13197710-13197777)
chr2 (218-285)||(15372289-15372356)
chr2 (218-285)||(15896905-15896972)
chr2 (215-285)||(44397610-44397680)
chr2 (218-251)||(12962821-12962854)
chr2 (216-285)||(13344547-13344616)
chr2 (224-277)||(20900670-20900723)
chr2 (235-287)||(14740528-14740580)
chr2 (217-285)||(16243782-16243850)
chr2 (210-274)||(30099174-30099238)
chr2 (217-285)||(37666609-37666677)
[»] chr4 (16 HSPs)
chr4 (214-285)||(3993039-3993110)
chr4 (217-285)||(48336326-48336394)
chr4 (218-285)||(20538686-20538753)
chr4 (216-262)||(24393906-24393952)
chr4 (217-285)||(3422123-3422191)
chr4 (217-285)||(33621859-33621927)
chr4 (218-285)||(3372184-3372251)
chr4 (218-285)||(6121893-6121960)
chr4 (217-272)||(17236864-17236919)
chr4 (218-285)||(47833674-47833741)
chr4 (218-285)||(51894582-51894649)
chr4 (215-285)||(3904680-3904750)
chr4 (215-285)||(53337433-53337503)
chr4 (218-274)||(1716301-1716357)
chr4 (217-285)||(47838616-47838684)
chr4 (233-285)||(50430433-50430485)
[»] scaffold0464 (1 HSPs)
scaffold0464 (217-285)||(6130-6198)
[»] scaffold0204 (1 HSPs)
scaffold0204 (217-285)||(23848-23916)
[»] chr8 (17 HSPs)
chr8 (217-285)||(32114474-32114542)
chr8 (209-285)||(32211354-32211430)
chr8 (218-285)||(3304278-3304345)
chr8 (215-285)||(2890159-2890229)
chr8 (216-285)||(54610-54679)
chr8 (217-285)||(7785777-7785845)
chr8 (217-285)||(12763653-12763721)
chr8 (217-285)||(39571202-39571270)
chr8 (218-285)||(6552718-6552785)
chr8 (214-285)||(25600996-25601067)
chr8 (218-285)||(33289261-33289328)
chr8 (221-287)||(4460534-4460600)
chr8 (217-287)||(30171543-30171613)
chr8 (217-285)||(7805698-7805766)
chr8 (216-280)||(33057662-33057726)
chr8 (217-285)||(43199353-43199421)
chr8 (217-285)||(44498186-44498254)
[»] chr3 (20 HSPs)
chr3 (218-285)||(34080030-34080097)
chr3 (214-285)||(51406736-51406807)
chr3 (210-272)||(53275287-53275349)
chr3 (216-285)||(49823379-49823448)
chr3 (217-285)||(10298042-10298110)
chr3 (217-285)||(40690995-40691063)
chr3 (218-285)||(19557052-19557119)
chr3 (218-285)||(42170346-42170413)
chr3 (218-285)||(48340460-48340527)
chr3 (215-285)||(9111491-9111561)
chr3 (215-285)||(22721994-22722064)
chr3 (218-280)||(34988143-34988205)
chr3 (233-287)||(53275356-53275410)
chr3 (216-285)||(8437488-8437557)
chr3 (217-286)||(9027141-9027210)
chr3 (216-285)||(37508984-37509053)
chr3 (218-274)||(2131746-2131802)
chr3 (217-285)||(8817385-8817453)
chr3 (217-285)||(17653775-17653843)
chr3 (218-250)||(21663003-21663035)
[»] chr1 (18 HSPs)
chr1 (215-285)||(25694382-25694452)
chr1 (217-273)||(11897129-11897185)
chr1 (217-285)||(14984900-14984968)
chr1 (217-285)||(17556816-17556884)
chr1 (218-285)||(11795996-11796063)
chr1 (218-285)||(27159358-27159425)
chr1 (218-285)||(31842795-31842862)
chr1 (218-285)||(39401966-39402033)
chr1 (218-285)||(44668093-44668160)
chr1 (216-274)||(16448182-16448240)
chr1 (228-262)||(40676799-40676833)
chr1 (210-251)||(38040267-38040308)
chr1 (216-285)||(47216697-47216766)
chr1 (217-262)||(47588423-47588468)
chr1 (217-285)||(1050951-1051019)
chr1 (221-285)||(9981710-9981774)
chr1 (217-285)||(34042759-34042827)
chr1 (218-274)||(47777481-47777537)
[»] chr5 (8 HSPs)
chr5 (216-285)||(17025687-17025756)
chr5 (218-286)||(6126886-6126954)
chr5 (217-285)||(9395413-9395481)
chr5 (217-285)||(36563537-36563605)
chr5 (217-285)||(41989406-41989474)
chr5 (216-285)||(11795231-11795300)
chr5 (217-274)||(13103098-13103155)
chr5 (216-285)||(37642017-37642086)
[»] scaffold0171 (1 HSPs)
scaffold0171 (235-286)||(12370-12421)
[»] scaffold0009 (1 HSPs)
scaffold0009 (212-285)||(49568-49641)
[»] scaffold0482 (1 HSPs)
scaffold0482 (217-285)||(12923-12991)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 5685682 - 5685400
Alignment:
Q  1 agtcactacatatgtaacataatcatccccatatttagagaactatactatatatcataatcatagtttcaaattgcactcgcagttacattgtaaacct 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||| | |||||||||    
T  5685682 agtcactacatatgtgacataatcatccccatatttagagaactatactatat--cataatcatagtttcaaattgcactcacagttatactgtaaacct 5685585  T
Q  101 ttatattgcagccttgcaggaaaatgtagctgcaattgtcattccaatgctgttgtggagacctctaaaactgttaagttgcagctgcagatcgcaattt 200  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5685584 ttatattgcagccttgcaggaa--tgtagccgcaattgtcattccaatgccgttgtggagacctctaaaactgttaagttgcagctgcagattgcaattt 5685487  T
Q  201 acaactataatattatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  5685486 acaactataatattatatactccatctggtcttatttataagaaacatttgggtcagcaaaatatgatgtaacttgttaataatttg 5685400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 14936452 - 14936527
Alignment:
Q  213 ttatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttgt 288  Q
    ||||||||||||||||||| ||| || ||||||||||| |||||||||||  |||||||||| ||||| |||||||    
T  14936452 ttatatactccctctggtcctatatagaagaaacatttaggtcaacaaaaggtgatgtatctagttaagaatttgt 14936527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 11572141 - 11572212
Alignment:
Q  214 tatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  11572141 tatatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 11572212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 3788170 - 3788100
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||||||||||||||| | |||| |||||||||||  |||||||| | ||||| ||||    
T  3788170 atatactccctccggtcttatttataagataaatttaggtcaacaaaagttgatgtatttagttaacaatt 3788100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 6330248 - 6330178
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  6330248 atatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 6330178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 4251423 - 4251370
Alignment:
Q  234 atttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    ||||||||||||||||| |||||| ||||| |||||||||| ||||| ||||||    
T  4251423 atttataagaaacatttaggtcaataaaatgtgatgtatctagttaagaatttg 4251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 8417924 - 8417879
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaa 262  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||    
T  8417924 atactccctctggtcttatttataagagaaatttaggtcaacaaaa 8417879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 13853591 - 13853660
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  13853591 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 13853660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 8099661 - 8099593
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  8099661 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 8099593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 9644827 - 9644759
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9644827 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9644759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 9650844 - 9650776
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9650844 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9650776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 26602454 - 26602386
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  26602454 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 26602386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 2830465 - 2830398
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  2830465 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 2830398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 8382969 - 8383036
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  8382969 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 8383036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 6068699 - 6068629
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||| ||||||||||  |||||||||| ||||| ||||    
T  6068699 atatactccctccggtcctatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaatt 6068629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 35030999 - 35031068
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||| |||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  35030999 tatacttcctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaatt 35031068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 28747126 - 28747190
Alignment:
Q  210 atattatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||||||||||   ||| ||||||||||| |  |||||||||||||||  ||||||||||    
T  28747126 atattatatactcccttcagtcctatttataagagaattttgggtcaacaaaagttgatgtatct 28747190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 28469612 - 28469542
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    ||||||||||||||| |||||||||||| ||||| |||||| ||||| ||||||||||  |||||||||||    
T  28469612 atactccctctggtcatatttataagaatcatttaggtcaataaaatgtgatgtatctgattaataatttg 28469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 7661210 - 7661150
Alignment:
Q  214 tatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||  ||||||||||    
T  7661210 tatatactccctctggtcctatttatatgagacatttgggtcaacaaaagttgatgtatct 7661150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 7269535 - 7269479
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||  ||||||||||    
T  7269535 tactccctccggtcttatttataagaaaaagttgggtcaacaaaaattgatgtatct 7269479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 38063912 - 38063980
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||||||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  38063912 atactccctctggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 38063980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 9268890 - 9268819
Alignment:
Q  214 tatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9268890 tatatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9268819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 1738446 - 1738514
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  1738446 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 1738514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 7240880 - 7240812
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  7240880 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 7240812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 7482356 - 7482288
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  7482356 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 7482288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 46840990 - 46840923
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  46840990 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 46840923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 13807395 - 13807354
Alignment:
Q  210 atattatatactccctctggtcttatttataagaaacatttg 251  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  13807395 atattatatactccctccggttctatttataagaaacatttg 13807354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 22285829 - 22285773
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  ||||||||||    
T  22285829 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatct 22285773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 36016196 - 36016252
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||||  ||||||||||    
T  36016196 tactccatctggtcctatttataagagaattttgggtcaacaaaagttgatgtatct 36016252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 36583526 - 36583458
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| | || ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  36583526 atactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 36583458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 13952545 - 13952603
Alignment:
Q  229 gtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||    
T  13952545 gtcttatttataagaaacatttaggttaacaaaatatgatttatcttgttaagaatttg 13952603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 14093752 - 14093810
Alignment:
Q  229 gtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||    
T  14093752 gtcttatttataagaaacatttaggttaacaaaatatgatttatcttgttaagaatttg 14093810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 23227271 - 23227328
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||||||    
T  23227271 atactccctctggtcatatttataagaaatatttaggtcaacaaaatgtgatgtatct 23227328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 41492895 - 41492963
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| | ||||||||||||||||  |||||||||| ||||| ||||    
T  41492895 atactccctccggtcctatttataagagaaatttgggtcaacaaaagttgatgtatctagttaaaaatt 41492963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 44398819 - 44398749
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  44398819 atatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 44398749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 3243129 - 3243182
Alignment:
Q  233 tatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataattt 286  Q
    |||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||    
T  3243129 tatttataagaaacatttaggtcaactaaatgtgatgtatctcgttaagaattt 3243182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 23986901 - 23986864
Alignment:
Q  225 tctggtcttatttataagaaacatttgggtcaacaaaa 262  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  23986901 tctggtcttatttataagaaacatttgagtcaacaaaa 23986864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 38917520 - 38917589
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  38917520 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 38917589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 3055689 - 3055621
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  3055689 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 3055621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 6648518 - 6648586
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  6648518 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 6648586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 9047754 - 9047822
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9047754 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9047822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 37990012 - 37990080
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  37990012 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 37990080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 41478638 - 41478706
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  41478638 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 41478706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 12337937 - 12338004
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  12337937 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 12338004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 13197710 - 13197777
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  13197710 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 13197777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 15372356 - 15372289
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  15372356 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctcgttaaaaatt 15372289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 15896972 - 15896905
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  15896972 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 15896905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 44397680 - 44397610
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| | |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  44397680 atatactccccccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 44397610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 12962854 - 12962821
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttg 251  Q
    |||||||||||||| |||||||||||||||||||    
T  12962854 tactccctctggtcctatttataagaaacatttg 12962821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 13344616 - 13344547
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  ||||| |||||||||  |||||||||| ||||| ||||    
T  13344616 tatactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaatt 13344547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 20900670 - 20900723
Alignment:
Q  224 ctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgt 277  Q
    |||||||  ||||||||||| |||||||||||| |||||  |||||||||||||    
T  20900670 ctctggttctatttataagagacatttgggtcagcaaaagttgatgtatcttgt 20900723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 14740580 - 14740528
Alignment:
Q  235 tttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    ||||||||||||||||  |||||| |||| |||||||||| ||||| ||||||    
T  14740580 tttataagaaacatttaagtcaactaaatgtgatgtatctggttaaaaatttg 14740528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 16243782 - 16243850
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||| || |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  16243782 atactccatccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 16243850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 30099174 - 30099238
Alignment:
Q  210 atattatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||| ||||||||||| |||| ||||||| ||| |  |||||||||||||||  ||||||||||    
T  30099174 atattttatactccctccggtcctatttattagagaattttgggtcaacaaaagttgatgtatct 30099238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 37666609 - 37666677
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  ||||||||||| |||  |||||||||| ||||| ||||    
T  37666609 atactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaatt 37666677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 3993110 - 3993039
Alignment:
Q  214 tatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  3993110 tatatactccctccggtcttatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 3993039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 48336394 - 48336326
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||  |||||||||| ||||| ||||    
T  48336394 atactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaatt 48336326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 20538686 - 20538753
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||| |||||||||| ||||| ||||    
T  20538686 tactccctccggtcctatttataagagaattttgggtcaacaaaatttgatgtatctagttaaaaatt 20538753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 24393952 - 24393906
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaa 262  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||    
T  24393952 tatactccctccggtcatattcataagaaacatttgggtcaacaaaa 24393906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 3422191 - 3422123
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  3422191 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 3422123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 33621927 - 33621859
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  33621927 atactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaatt 33621859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 3372251 - 3372184
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  3372251 tactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaatt 3372184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 6121893 - 6121960
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  6121893 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 6121960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 17236919 - 17236864
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtat 272  Q
    |||||| ||| |||| ||||||||||||| ||||||||||||||||  ||||||||    
T  17236919 atactctctccggtcctatttataagaaaaatttgggtcaacaaaagttgatgtat 17236864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 47833741 - 47833674
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  47833741 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 47833674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 51894582 - 51894649
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  51894582 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctggttaaaaatt 51894649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 3904680 - 3904750
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||| | ||||| ||||    
T  3904680 atatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatttagttaaaaatt 3904750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 53337503 - 53337433
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||||||||| ||||  |||||||||| ||||| ||||    
T  53337503 atatactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaatt 53337433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 1716301 - 1716357
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||| |||||||||||||||| | | || |||||||||||  ||||||||||    
T  1716301 tactccctccggtcttatttataagagataatttggtcaacaaaagttgatgtatct 1716357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 47838616 - 47838684
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  ||| |||||||||||  |||||||||| ||||| ||||    
T  47838616 atactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaatt 47838684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 50430433 - 50430485
Alignment:
Q  233 tatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| | ||||||||||||||||  |||||||||| ||||| ||||    
T  50430433 tatttataagatatatttgggtcaacaaaaattgatgtatctggttaaaaatt 50430485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 6130 - 6198
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||  |||||||||| ||||| ||||    
T  6130 atactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaatt 6198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 23916 - 23848
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||  |||||||||| ||||| ||||    
T  23916 atactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaatt 23848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 32114474 - 32114542
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||  |||||||||| ||||| ||||    
T  32114474 atactccctccggtcctatttataagaaaattttgggtcaacaaaaattgatgtatctagttaaaaatt 32114542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 32211354 - 32211430
Alignment:
Q  209 aatattatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||| |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  32211354 aatattaaatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaatt 32211430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 3304278 - 3304345
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| |||||||||||||  |||||||||||||||  |||||||||| ||||| ||||    
T  3304278 tactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaatt 3304345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 2890159 - 2890229
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  2890159 atatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 2890229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 54610 - 54679
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  54610 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 54679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 7785777 - 7785845
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  7785777 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 7785845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 12763653 - 12763721
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  12763653 atactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaatt 12763721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 39571202 - 39571270
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  39571202 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 39571270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 6552785 - 6552718
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  6552785 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 6552718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 25600996 - 25601067
Alignment:
Q  214 tatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||||| |||| ||||||||||| |  |||||||||||||||  | |||||||| ||||| ||||    
T  25600996 tatatactccctccggtcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaatt 25601067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 33289261 - 33289328
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  33289261 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 33289328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 4460600 - 4460534
Alignment:
Q  221 tccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    |||||| |||| ||| | |||||||||||| |||||||||||| ||||||||||  |||| ||||||    
T  4460600 tccctccggtcctatatttaagaaacatttcggtcaacaaaatgtgatgtatctgattaagaatttg 4460534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 30171613 - 30171543
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    ||||||| |||||||  |||||||||||||||||  |||||||||||  |||||||||  |||| ||||||    
T  30171613 atactccgtctggtcccatttataagaaacatttaagtcaacaaaatgcgatgtatctgattaagaatttg 30171543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 7805698 - 7805766
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  ||||||||| |||||  |||||||||| ||||| ||||    
T  7805698 atactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaatt 7805766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 33057726 - 33057662
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaa 280  Q
    |||||||| || |||||||||||||||| | | || |||||||||||  |||||||||| |||||    
T  33057726 tatactccatccggtcttatttataagagaaagtttggtcaacaaaaattgatgtatctggttaa 33057662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 43199353 - 43199421
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  ||| |||||||||||  |||||||||| ||||| ||||    
T  43199353 atactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaatt 43199421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 44498186 - 44498254
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||| ||||  |||||||||| ||||| ||||    
T  44498186 atactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaatt 44498254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 34080030 - 34080097
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||||||||| ||||    
T  34080030 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatcttgttaaaaatt 34080097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 51406807 - 51406736
Alignment:
Q  214 tatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  51406807 tatatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaatt 51406736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 53275287 - 53275349
Alignment:
Q  210 atattatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtat 272  Q
    |||||||||||||||| |||| |||||||||| | | ||||||||||||||||  ||||||||    
T  53275287 atattatatactccctttggtattatttataaaagatatttgggtcaacaaaaattgatgtat 53275349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 49823379 - 49823448
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  49823379 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 49823448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 10298110 - 10298042
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  10298110 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 10298042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 40690995 - 40691063
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  40690995 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 40691063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 19557052 - 19557119
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  19557052 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 19557119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 42170346 - 42170413
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  42170346 tactccatctggtcctatttataagagaattttgggtcaacaaaagttgatgtatctggttaaaaatt 42170413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 48340527 - 48340460
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  48340527 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 48340460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 9111491 - 9111561
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||| |||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9111491 atatattccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9111561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 22722064 - 22721994
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| || |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  22722064 atatactccatccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 22721994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 34988205 - 34988143
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaa 280  Q
    ||||||||| |||| ||||||||||||| ||||| |||||||| |  |||||||||| |||||    
T  34988205 tactccctccggtcctatttataagaaatatttgagtcaacaatagttgatgtatctagttaa 34988143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 53275410 - 53275356
Alignment:
Q  233 tatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatttg 287  Q
    ||||||||||||| |||  |||||||||||||||||||||||  |||| ||||||    
T  53275410 tatttataagaaatattaaggtcaacaaaatatgatgtatctaattaagaatttg 53275356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 8437557 - 8437488
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||| ||||||||||  |||||||||| ||||| ||||    
T  8437557 tatactccctccggtcctatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaatt 8437488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 9027141 - 9027210
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataattt 286  Q
    |||||||||| |||| ||||||||||| | | ||||||||||||||  |||||||||  ||||| |||||    
T  9027141 atactccctccggtcctatttataagataaagttgggtcaacaaaagttgatgtatcaggttaacaattt 9027210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 37509053 - 37508984
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||| |||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  37509053 tatactacctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 37508984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 2131802 - 2131746
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||| |||| || |||| ||| ||||||||||||||||||  ||||||||||    
T  2131802 tactccctccggtcctacttatgagagacatttgggtcaacaaaagttgatgtatct 2131746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 8817385 - 8817453
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||| || |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  8817385 atactccttccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 8817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 17653843 - 17653775
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||| |||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  17653843 atactacctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 17653775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 21663035 - 21663003
Alignment:
Q  218 tactccctctggtcttatttataagaaacattt 250  Q
    ||||||||| |||||||||||||||||||||||    
T  21663035 tactccctccggtcttatttataagaaacattt 21663003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 25694452 - 25694382
Alignment:
Q  215 atatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  25694452 atatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 25694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 11897185 - 11897129
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatc 273  Q
    |||||||||| |||| ||||||||||| | ||||||||||||||||  |||||||||    
T  11897185 atactccctccggtcctatttataagagaaatttgggtcaacaaaagttgatgtatc 11897129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 14984968 - 14984900
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  14984968 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 14984900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 17556884 - 17556816
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| | | ||||||||||||||  |||||||||| ||||| ||||    
T  17556884 atactccctccggtcctatttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaatt 17556816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 11796063 - 11795996
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  11796063 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 11795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 27159358 - 27159425
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  27159358 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 27159425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 31842795 - 31842862
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  31842795 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 31842862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 39401966 - 39402033
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  39401966 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 39402033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 44668093 - 44668160
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  44668093 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 44668160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 16448240 - 16448182
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||||| |||| ||||||||||| | | ||||||||||||||  ||||||||||    
T  16448240 tatactccctccggtcctatttataagagaaagttgggtcaacaaaagttgatgtatct 16448182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 40676799 - 40676833
Alignment:
Q  228 ggtcttatttataagaaacatttgggtcaacaaaa 262  Q
    ||||||||||||||||||||||| |||||||||||    
T  40676799 ggtcttatttataagaaacattttggtcaacaaaa 40676833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 38040267 - 38040308
Alignment:
Q  210 atattatatactccctctggtcttatttataagaaacatttg 251  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  38040267 atattatatactcccttcggtcctatttataagaaacatttg 38040308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 47216697 - 47216766
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||  ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  47216697 tatactccctccggtactatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 47216766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 47588468 - 47588423
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaa 262  Q
    ||||| ||||||||||||||||||||| | |||| |||||||||||    
T  47588468 atactacctctggtcttatttataagagaaatttaggtcaacaaaa 47588423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 1051019 - 1050951
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  ||||||||||| |||  |||||||||| ||||| ||||    
T  1051019 atactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaatt 1050951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 9981774 - 9981710
Alignment:
Q  221 tccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9981774 tccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 34042827 - 34042759
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||  ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  34042827 atactccctccggttctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 34042759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 47777481 - 47777537
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  ||||||||||    
T  47777481 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatct 47777537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 17025756 - 17025687
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  17025756 tatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 17025687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 6126954 - 6126886
Alignment:
Q  218 tactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataattt 286  Q
    ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| |||||    
T  6126954 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattt 6126886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 9395481 - 9395413
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  9395481 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 9395413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 36563537 - 36563605
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  36563537 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 36563605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 41989406 - 41989474
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  41989406 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 41989474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 11795300 - 11795231
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||||  ||| ||||||||||| |  |||||||||||||||  |||||||||| ||||| ||||    
T  11795300 tatactccctccagtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatt 11795231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 13103155 - 13103098
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatct 274  Q
    |||||||||| |||| ||||||||||| |  |||||||||||||||  ||||||||||    
T  13103155 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatct 13103098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 37642086 - 37642017
Alignment:
Q  216 tatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||||||||| |||| ||||||||||| |  |||||||||| ||||  |||||||||| ||||| ||||    
T  37642086 tatactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaatt 37642017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 12370 - 12421
Alignment:
Q  235 tttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataattt 286  Q
    |||||||||||||||  |||||||||||| |||||||||| ||||| |||||    
T  12370 tttataagaaacattcaggtcaacaaaatgtgatgtatctggttaagaattt 12421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 49641 - 49568
Alignment:
Q  212 attatatactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    ||||| ||||||||| |||| ||||||||||| |  |||||||||||||||  |||||||| | ||||| ||||    
T  49641 attatttactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaatt 49568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 12991 - 12923
Alignment:
Q  217 atactccctctggtcttatttataagaaacatttgggtcaacaaaatatgatgtatcttgttaataatt 285  Q
    |||||||||| |||| ||||||||||| |  ||||||||| |||||  |||||||||| ||||| ||||    
T  12991 atactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaatt 12923  T

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