View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15656_low_16 (Length: 284)
Name: NF15656_low_16
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15656_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 47264729 - 47264482
Alignment:
| Q |
20 |
ctttttctttcattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47264729 |
ctttttctttcattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttggtcatctatgtcagacaatagtttaacttc |
47264630 |
T |
|
| Q |
120 |
gcgaggagtgggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatatgatatgagaaaataagt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47264629 |
gcgaggagtgggtgcagctggtggcaccaactctggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatatgatatgagaaaataagt |
47264530 |
T |
|
| Q |
220 |
gttgtgtgagttaataaaaatgacttgtgtacgtaaacctgaagtctgtg |
269 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47264529 |
gttgtgtgagttaat--aaatgacttgtgtacgtaaacctgaagtctgtg |
47264482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 47275297 - 47275115
Alignment:
| Q |
20 |
ctttttctttcattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttc |
119 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47275297 |
ctttctctatcattgatggttcatgacgatagataaatatgataggcatattgaaacgcaagcattcttgatcatctatgtcagataatagtttaacttc |
47275198 |
T |
|
| Q |
120 |
gcgaggagtgggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
47275197 |
gcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
47275115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 47301062 - 47301234
Alignment:
| Q |
30 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
129 |
Q |
| |
|
|||||| ||||| ||| |||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
47301062 |
cattgatggttcgtgatgatagataaagatcataggaatattgaagcgcaaaccttcttgatcatctatgtcagataatagtttaacttcacaaggagtg |
47301161 |
T |
|
| Q |
130 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
47301162 |
ggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
47301234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 47282025 - 47281862
Alignment:
| Q |
30 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
129 |
Q |
| |
|
|||||| ||||| |||||||||||||| || ||||| ||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47282025 |
cattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagataatagtttaacttcgcgaggagtg |
47281926 |
T |
|
| Q |
130 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaag |
193 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
47281925 |
ggtgcagctggtggcaccaactctggttggcacctccgcactgtcaacaataatggtgatgaag |
47281862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 47240814 - 47240681
Alignment:
| Q |
69 |
attgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcagctggtggcaccaacactggttggctcctccgc |
168 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
47240814 |
attgaatcgcaaaccttcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgc |
47240715 |
T |
|
| Q |
169 |
actgtgaacaataatggtgctgaagtcatgatat |
202 |
Q |
| |
|
|||||||||| ||| | || |||||||||||||| |
|
|
| T |
47240714 |
actgtgaacattaacgatgatgaagtcatgatat |
47240681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 47296486 - 47296642
Alignment:
| Q |
46 |
cgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcagctggtggca |
145 |
Q |
| |
|
||||||||||| || | |||| ||||||| || | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47296486 |
cgatagataaatatgacaggactattgaatcgcataccttcttgatcatctatgtcagataatagtttaacttcacgaggagtgggtgcagctggtggca |
47296585 |
T |
|
| Q |
146 |
ccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
202 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||| | || |||||||||||||| |
|
|
| T |
47296586 |
ccaactctggttggcacctccgcactgtgaacattaacgatgatgaagtcatgatat |
47296642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 47255685 - 47255512
Alignment:
| Q |
20 |
ctttttctttcattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttc |
119 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| ||| || | ||||| ||||||||| | ||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
47255685 |
ctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaagattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
47255586 |
T |
|
| Q |
120 |
gcgaggagtgggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaag |
193 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
47255585 |
atgaggagtgggtgcagctggaagtaccaactctggttgggacctccgcactgtgaacaataatggtgatgaag |
47255512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 32729388 - 32729216
Alignment:
| Q |
30 |
cattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtg |
129 |
Q |
| |
|
|||||| ||||| ||||||||||||| || | ||||| ||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
32729388 |
cattgatggttcgcgacgatagataaatatgacaggaacattgaaacgcaaaccttcttgatcatctatatcagataatagtttaacttcgcgaggagtg |
32729289 |
T |
|
| Q |
130 |
ggtgcagctggtggcaccaacactggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatat |
202 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
32729288 |
ggtgcaactggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagtcatgatat |
32729216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 20511718 - 20511577
Alignment:
| Q |
37 |
ggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttgatcatctatgtcagacaatagtttaacttcgcgaggagtgggtgcag |
136 |
Q |
| |
|
||||||||| |||||||||| || | | |||||||| |||| | | || |||||||||||||||||| | || ||||| ||| |||||||||||||||| |
|
|
| T |
20511718 |
ggttcatgatgatagataaagatgagaagaatattgcaacggagacttttttgatcatctatgtcagatagtattttaaattcacgaggagtgggtgcag |
20511619 |
T |
|
| Q |
137 |
ctggtggcaccaacactggttggctcctccgcactgtgaaca |
178 |
Q |
| |
|
|||| || |||| | |||||||| ||| ||||| ||||||| |
|
|
| T |
20511618 |
ctggaggtaccagctgtggttggcaccttcgcacagtgaaca |
20511577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University