View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15656_low_3 (Length: 616)
Name: NF15656_low_3
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15656_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 324 - 616
Target Start/End: Original strand, 2571685 - 2571977
Alignment:
| Q |
324 |
gccgcgtgcaaaacgacattgtatccgaaactatgtcgctcgatgctatccgcaattcgttcatcaccatcagatccatataactatggaaaattctcca |
423 |
Q |
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| T |
2571685 |
gccgcgtgcaaaacgacattgtatccgaaactatgtcgctcaatgctatccgcaattcgttcatcaccatcagatccatataactatggaaaattctcca |
2571784 |
T |
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| Q |
424 |
taaagcaaaacttaaaagtagcaagaaaactagaaaaagtgttcatagatttcctcaatcgccaccaatcatcttcatcattaaaccatgaagaagttgg |
523 |
Q |
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| T |
2571785 |
taaagcaaaacctaaaagtagcaagaaaactagaaaaagtgttcatagatttcctcaatcgccaccaatcatcttcatcattaaaccatgaagaagttgg |
2571884 |
T |
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| Q |
524 |
tgcactagttgattgcaaagaccttaactcactaaatgtagattacttagaatccatttctgacgaactaaaatcagctacttcttcttcttc |
616 |
Q |
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| T |
2571885 |
tgcattagttgattgcaaagaccttaactcactaaatgtagattacttagaatccatttctgatgaactaaaatcagctagttcttcttcttc |
2571977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 2571450 - 2571608
Alignment:
| Q |
89 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
188 |
Q |
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| T |
2571450 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
2571549 |
T |
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| Q |
189 |
cacctttcattatacttccnnnnnnncatgtcaccttcactttcccttctccttttcat |
247 |
Q |
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| T |
2571550 |
cacctttcattaaacttccaaaaaaacatgtcaccttcactttcccttctccttttcat |
2571608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 2571199 - 2571256
Alignment:
| Q |
28 |
ttaataacacattgaagagtgacaatgttattttccaaataaactatttagagatagg |
85 |
Q |
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| T |
2571199 |
ttaataacacattgaagactgacaatgttatttttcaaataaactatttagagatagg |
2571256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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