View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15656_low_5 (Length: 455)

Name: NF15656_low_5
Description: NF15656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15656_low_5
NF15656_low_5
[»] chr3 (16 HSPs)
chr3 (20-444)||(19905625-19906033)
chr3 (40-253)||(13291680-13291896)
chr3 (20-218)||(4514564-4514756)
chr3 (23-139)||(17034556-17034673)
chr3 (365-439)||(38076178-38076252)
chr3 (149-266)||(17119027-17119144)
chr3 (191-327)||(23955117-23955254)
chr3 (34-242)||(10928848-10929059)
chr3 (170-269)||(14427198-14427297)
chr3 (375-433)||(13291516-13291574)
chr3 (29-102)||(19307077-19307152)
chr3 (20-91)||(5699796-5699867)
chr3 (23-103)||(8109602-8109682)
chr3 (399-438)||(17119271-17119310)
chr3 (359-439)||(5554741-5554821)
chr3 (371-439)||(14332499-14332567)
[»] chr8 (17 HSPs)
chr8 (40-215)||(26576509-26576686)
chr8 (23-269)||(23520950-23521197)
chr8 (22-270)||(23584888-23585139)
chr8 (29-269)||(28890178-28890420)
chr8 (40-135)||(19008105-19008200)
chr8 (114-269)||(24277162-24277317)
chr8 (112-217)||(24502661-24502766)
chr8 (115-166)||(25727571-25727622)
chr8 (40-91)||(7321574-7321625)
chr8 (376-439)||(25724471-25724534)
chr8 (365-439)||(24277009-24277083)
chr8 (20-61)||(24308928-24308969)
chr8 (73-161)||(24269373-24269460)
chr8 (20-90)||(18565058-18565125)
chr8 (376-439)||(25727351-25727413)
chr8 (40-90)||(29757700-29757750)
chr8 (399-439)||(24308704-24308744)
[»] chr7 (14 HSPs)
chr7 (75-309)||(10646711-10646947)
chr7 (29-439)||(5265142-5265551)
chr7 (20-309)||(1782883-1783174)
chr7 (29-269)||(32957481-32957723)
chr7 (20-217)||(17891383-17891582)
chr7 (71-269)||(27707297-27707495)
chr7 (359-439)||(1783207-1783287)
chr7 (20-242)||(1777074-1777298)
chr7 (133-215)||(12733585-12733667)
chr7 (378-439)||(26822550-26822611)
chr7 (377-443)||(7185427-7185494)
chr7 (184-247)||(31272844-31272907)
chr7 (29-106)||(22975164-22975243)
chr7 (188-272)||(26822368-26822452)
[»] chr1 (24 HSPs)
chr1 (41-269)||(30805815-30806047)
chr1 (20-217)||(19003157-19003357)
chr1 (20-210)||(18932728-18932920)
chr1 (20-309)||(26897932-26898225)
chr1 (20-242)||(17496646-17496871)
chr1 (20-195)||(12397690-12397868)
chr1 (29-269)||(33438813-33439059)
chr1 (359-439)||(30805679-30805759)
chr1 (20-104)||(17316523-17316609)
chr1 (19-242)||(12669098-12669324)
chr1 (112-211)||(17103360-17103459)
chr1 (20-242)||(22666140-22666365)
chr1 (359-439)||(33439130-33439210)
chr1 (29-102)||(14580796-14580868)
chr1 (20-103)||(15440586-15440670)
chr1 (20-134)||(25791564-25791679)
chr1 (20-242)||(19019132-19019355)
chr1 (45-103)||(31584458-31584517)
chr1 (401-443)||(22666541-22666583)
chr1 (401-437)||(15650901-15650937)
chr1 (61-109)||(16636974-16637022)
chr1 (189-269)||(17316372-17316452)
chr1 (377-429)||(19018923-19018975)
chr1 (42-132)||(37283437-37283530)
[»] chr2 (22 HSPs)
chr2 (29-270)||(35666040-35666281)
chr2 (80-296)||(16587044-16587261)
chr2 (20-363)||(19877940-19878284)
chr2 (67-331)||(16917320-16917586)
chr2 (29-242)||(27765607-27765823)
chr2 (20-90)||(13073541-13073611)
chr2 (41-211)||(21748547-21748720)
chr2 (20-215)||(42256160-42256356)
chr2 (41-242)||(29409516-29409719)
chr2 (20-106)||(17417573-17417661)
chr2 (32-106)||(21548432-21548508)
chr2 (359-439)||(28449312-28449392)
chr2 (29-106)||(22311913-22311992)
chr2 (29-105)||(19564535-19564613)
chr2 (377-439)||(21748285-21748348)
chr2 (40-99)||(23959297-23959356)
chr2 (380-435)||(35665968-35666023)
chr2 (401-439)||(22311373-22311411)
chr2 (188-250)||(25564001-25564063)
chr2 (401-439)||(29409926-29409964)
chr2 (180-292)||(28449425-28449538)
chr2 (29-106)||(25916737-25916815)
[»] chr6 (12 HSPs)
chr6 (70-266)||(11703949-11704146)
chr6 (29-251)||(4097759-4097984)
chr6 (20-439)||(4312253-4312675)
chr6 (19-269)||(10814760-10815013)
chr6 (18-215)||(21746936-21747129)
chr6 (20-132)||(17291442-17291555)
chr6 (120-269)||(24575785-24575934)
chr6 (19-209)||(10821003-10821196)
chr6 (29-109)||(29031880-29031959)
chr6 (41-106)||(19490838-19490905)
chr6 (120-215)||(13487837-13487931)
chr6 (20-106)||(18615369-18615457)
[»] scaffold0650 (1 HSPs)
scaffold0650 (30-269)||(5776-6019)
[»] chr4 (17 HSPs)
chr4 (20-418)||(19053089-19053478)
chr4 (29-296)||(17474053-17474322)
chr4 (72-217)||(11449418-11449564)
chr4 (20-156)||(16404959-16405094)
chr4 (72-439)||(11545141-11545492)
chr4 (29-164)||(14475183-14475321)
chr4 (180-292)||(11419750-11419862)
chr4 (365-439)||(11449262-11449336)
chr4 (68-217)||(21810009-21810159)
chr4 (28-161)||(47575581-47575717)
chr4 (20-105)||(18445811-18445898)
chr4 (359-439)||(21821935-21822015)
chr4 (316-439)||(47575798-47575921)
chr4 (29-106)||(19555453-19555532)
chr4 (144-215)||(4746279-4746350)
chr4 (29-64)||(4746426-4746461)
chr4 (405-441)||(18446227-18446263)
[»] chr5 (18 HSPs)
chr5 (20-102)||(25936361-25936443)
chr5 (29-91)||(31730435-31730497)
chr5 (29-106)||(6999060-6999139)
chr5 (20-103)||(22826016-22826101)
chr5 (360-441)||(27499989-27500070)
chr5 (76-269)||(27499738-27499932)
chr5 (32-164)||(30608338-30608473)
chr5 (20-106)||(24838503-24838591)
chr5 (29-217)||(37336518-37336709)
chr5 (188-269)||(26013770-26013851)
chr5 (399-439)||(30608046-30608086)
chr5 (120-171)||(12859881-12859932)
chr5 (181-267)||(22826179-22826265)
chr5 (401-439)||(24492239-24492277)
chr5 (20-103)||(26013599-26013684)
chr5 (359-409)||(26335413-26335463)
chr5 (20-81)||(19642169-19642230)
chr5 (188-263)||(22186068-22186144)
[»] scaffold0053 (1 HSPs)
scaffold0053 (29-106)||(27767-27846)
[»] scaffold0804 (1 HSPs)
scaffold0804 (29-102)||(513-585)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Original strand, 19905625 - 19906033
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatattgcc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19905625 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatattgcc 19905724  T
Q  120 tgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttat 219  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  19905725 ----------------gttgatttgacatttgaaatttctttgctgcgactggaactatttgttcattctctttgtctttgaagttctttatttgtttat 19905808  T
Q  220 atatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtcccaaagagtctt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19905809 atatgttgtcagaagatgacaaactatactatcatagtttgatagagacagctgcacaagagaacaaatctgatgtgacttctgggtcccaaagagtctt 19905908  T
Q  320 atgttcttcagatcctggtgatcttcagagtctgacatccttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19905909 atgttcttcagatcctggtgatcttcagagtctgacatccttcaaagtcttatgcagatcttcagcttctgcgtgactacctttcttctgatccaagatg 19906008  T
Q  420 ttgacttctgattgacctttttcat 444  Q
    |||||||||||||||||||||||||    
T  19906009 ttgacttctgattgacctttttcat 19906033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 13291896 - 13291680
Alignment:
Q  40 aggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatatgaataatgtcg 136  Q
    |||||||||||||||||||||| |  || || |||||||||| ||||||||||||||||||||||||||||| |   ||| ||||||||| ||||||       
T  13291896 aggatttgagagacgttggagaagagtgtcaacgcattaagaatcgttgagaagtttcaaatcaaggacattgggccatttcctgatatggataatgcaa 13291797  T
Q  137 ttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagat 236  Q
    |||||| ||||||||||||||||||| ||  |||| || |||  |||||| || |||||| ||| |||||||||||||||| || | || |||||||||     
T  13291796 ttgattagacatttgaaatttctttgttgaaactgaaattatccgttcattctttttgtccttggagttctttgtttgtttctacacgtggtcagaagaa 13291697  T
Q  237 gacaaactatactatca 253  Q
    |||||| | ||||||||    
T  13291696 gacaaattgtactatca 13291680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 4514564 - 4514756
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgc 118  Q
    |||||||| |||||||||| ||||||||||||||| ||        |||||||||| |||||||||||||||||||||||||||||| || | |  ||||    
T  4514564 ttcaactccttatataggcaaggatttgagagacgatg--------ccagcgcattgagagtcgttgagaagtttcaaatcaaggacgttaggtctttgc 4514655  T
Q  119 ctgatatgaataatgtcgttgatttgacatttgaaatttc-tttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgttt 217  Q
    |||||| | |||||||||| ||||   ||||||||||| | |||||||| ||| ||| ||| ||||| | ||||||||  |||||||||||||||| |||    
T  4514656 ctgataaggataatgtcgtggattattcatttgaaattccttttgctgcaactagaattatctgttcgttctctttgtacttgaagttctttgttttttt 4514755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 17034673 - 17034556
Alignment:
Q  23 aactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgcctg 121  Q
    ||||| |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||  ||| || | || |||||||    
T  17034673 aactccttatataggcaaggatttgagagacgttggagaggtgacaacgcattaagagtcgttgagaagcttcgaatcatagacgttggaatgttgcctg 17034574  T
Q  122 atatgaataatgtcgttg 139  Q
    |||||  |||||||||||    
T  17034573 atatggttaatgtcgttg 17034556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 38076252 - 38076178
Alignment:
Q  365 agtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||||    
T  38076252 agtctgatgcagatcttcagcttctgagtgacttcctttcttctgatccaaggtgtcgacttctggttgaccttt 38076178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 17119027 - 17119144
Alignment:
Q  149 ttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatac 248  Q
    |||||||| |||||| |  ||||||| |||  |||||| ||||||||| |||||||||||||||||||| |||| ||  |||||||| |||||| | |||    
T  17119027 ttgaaattcctttgcggaaactggaattatcagttcattctctttgtccttgaagttctttgtttgtttctatacgtgatcagaagaagacaaattgtac 17119126  T
Q  249 tatcatagtttgatagag 266  Q
    || |||| | ||||||||    
T  17119127 tagcatactctgatagag 17119144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 327
Target Start/End: Complemental strand, 23955254 - 23955117
Alignment:
Q  191 tttgtctttgaagttctttgtttgttta-tatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatc 289  Q
    |||||| |||||||||||||| |||||  || |||| |||||||||| |||||||||| |||||||||||||| ||||||| | || ||||| | |||||    
T  23955254 tttgtccttgaagttctttgtctgttttctacatgtggtcagaagatcacaaactataatatcatagtttgatcgagacagctacagaagaggaaaaatc 23955155  T
Q  290 tgatgtgacttctgggtcccaaagagtcttatgttctt 327  Q
    | ||| | ||||| ||| ||  || ||||| |||||||    
T  23955154 taatgcggcttcttggttcctcagtgtcttttgttctt 23955117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 10928848 - 10929059
Alignment:
Q  34 taggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt-gcctgatatgaata 130  Q
    ||||| ||||| ||| |||||||||||| |  ||||| | |||||||||||||||||||| || ||||||||||   | | | || |||||||||| |||    
T  10928848 taggcaaggatatgaaagacgttggagaagagtgccaacacattaagagtcgttgagaagcttgaaatcaaggatgataggtctttgcctgatatggata 10928947  T
Q  131 atgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtca 230  Q
    ||| | |||||| ||||||  ||||| | ||||||  ||||||| |||   ||||| |||||| || ||||||||| |||||||||| || |  | ||||    
T  10928948 atgccattgattagacattcaaaattccattgctgaaactggaattatccattcattctctttatccttgaagttccttgtttgtttctacacatggtca 10929047  T
Q  231 gaagatgacaaa 242  Q
    ||||| ||||||    
T  10929048 gaagaggacaaa 10929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 14427297 - 14427198
Alignment:
Q  170 tggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    ||||| ||| ||||||| |||| |||| ||||||||||||||||||||||| | || || |||| | |||||| | |||||||| | |||||||||||||    
T  14427297 tggaattatctgttcattctctatgtccttgaagttctttgtttgtttatacacgtggttagaaaaagacaaattgtactatcagactttgatagagaca 14427198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 13291574 - 13291516
Alignment:
Q  375 agatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattg 433  Q
    ||||||||| |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  13291574 agatcttcaacttcttcgtgactttctttcttctgatccaagatgttgacttctgattg 13291516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 19307152 - 19307077
Alignment:
Q  29 ttatataggctaggatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaa 102  Q
    |||||||||| ||||||||||||||| ||||||   ||| ||| |||||||||||| |||||||| ||||||||||    
T  19307152 ttatataggcaaggatttgagagacgctggagaagagtgtcagtgcattaagagtcattgagaagcttcaaatcaa 19307077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 5699867 - 5699796
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag 91  Q
    |||||||| ||||||||   |||| |||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  5699867 ttcaactcattatatagtgaaggaattgagagacgttggagaggttccaacacattaagagtccttgagaag 5699796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 8109602 - 8109682
Alignment:
Q  23 aactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag-tttcaaatcaag 103  Q
    |||||||| |||||   |||||||||||||||||||||| |||||| | |||||| |||| |||||||| ||||||||||||    
T  8109602 aactctttttatagagaaggatttgagagacgttggaga-gtgccaacacattaacagtctttgagaagctttcaaatcaag 8109682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 438
Target Start/End: Original strand, 17119271 - 17119310
Alignment:
Q  399 cctttcttctgatccaagatgttgacttctgattgacctt 438  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  17119271 cctttcttctgatccaaggtgttgacttctggttgacctt 17119310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 5554821 - 5554741
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||||| ||| ||||||||| ||||| ||| ||  |||||||||||||| |||  |||||||| || |||||||||    
T  5554821 cttcagagtctgatgaagatcttcaacttctaagtaacatcctttcttctgatcgaaggcgttgacttttggttgaccttt 5554741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 14332499 - 14332567
Alignment:
Q  371 atgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||||| || |||||||||||| | |||||||| ||| |||  ||||||||||| |||||||||    
T  14332499 atgcatatctttagattctgagtgacttcatttcttcttatctaaggcgttgacttctggttgaccttt 14332567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 26576509 - 26576686
Alignment:
Q  40 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atatt-gcctgatatgaataatgtcgt 137  Q
    |||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||| || | ||||| ||||||||| |||||||||||    
T  26576509 aggatttgagagacgttacagaggttccagcgcattaagagtcgttgagaagcttcaaatcaaggacgttggtatatttgcctgatataaataatgtcgt 26576608  T
Q  138 tgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
    ||||  || |||||||||| ||||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||    
T  26576609 tgatgggatatttgaaattcctttgttgcaactggaattatttgttcattctttttgtctttgaagttctttgtttgt 26576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 23521197 - 23520950
Alignment:
Q  23 aactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctg 121  Q
    ||||| || |||| || ||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |  || |   ||| ||||    
T  23521197 aactccttgtatatgcaaggatttaagagacgttgaagaggtgtcagcgcattaagagtcgttgggaagtttcaaatcaagaatgttgggccattacctg 23521098  T
Q  122 atatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatat 221  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||  ||| |||   ||||| ||||||||| |||||||| ||||| ||||| ||     
T  23521097 atatgaataatgtcgttgattagacatttgaaattactttgctgcaacatgaattatccattcattctctttgtccttgaagttttttgtctgtttttac 23520998  T
Q  222 atgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    | || |||| ||||||||||| | ||| |||| ||||| |||||||||    
T  23520997 acgtggtcaaaagatgacaaattgtacaatcagagtttaatagagaca 23520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 23585139 - 23584888
Alignment:
Q  22 caactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt-gc 118  Q
    |||||| ||||||| || ||||||||||| || ||| ||| |  ||| ||| |||||||||||||| ||||  |||||| ||| ||| ||   | || ||    
T  23585139 caactccttatatacgcaaggatttgagaaacattgtagaagagtgctagcacattaagagtcgttaagaatcttcaaaacaacgacgttgagtctttgc 23585040  T
Q  119 ctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgttta 218  Q
    || || || ||||| | ||||||| ||||||||||||||||||| ||  ||| |||| ||  |||||| ||||||||| |||||||||||||||||||||    
T  23585039 ctaatttggataattttgttgattggacatttgaaatttctttgttgaaactagaacaatccgttcattctctttgtccttgaagttctttgtttgttta 23584940  T
Q  219 tatatgttgtcagaagatgacaaactatactatcatagtttgatagagacag 270  Q
    || | || ||||||| | |||||| | |||||||| | ||||||||||||||    
T  23584939 tacacgtggtcagaataagacaaagtgtactatcagactttgatagagacag 23584888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 28890178 - 28890420
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagag--gtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt-gcctgatat 125  Q
    |||||||||| ||||||| | ||||||||||||   |||||   ||||||||||||||||||||| |||||||||||||  || | | || |||||||||    
T  28890178 ttatataggcaaggatttaa-agacgttggagaaaagtgccgatgcattaagagtcgttgagaagcttcaaatcaaggatgttggttttttgcctgatat 28890276  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    | ||||||||||||||| |||||| |||||| |||||||   | ||||| | | ||||||| ||||||||  |||||||||  ||||||||| || |  |    
T  28890277 ggataatgtcgttgattagacattcgaaattcctttgctaaaattggaattttctgttcattctctttgttcttgaagttccatgtttgtttctacacat 28890376  T
Q  226 tgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
     ||||||||| |||||| | ||  |||| | |||||||||||||    
T  28890377 ggtcagaagaggacaaattgtatgatcagactttgatagagaca 28890420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 19008105 - 19008200
Alignment:
Q  40 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgcctgatatgaataatgtc 135  Q
    ||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||| | | || | || ||||||||||||| |||||||    
T  19008105 aggatttgagagacgttggagagtttc-agcgcattaagattcgttgagaagtttcaaatcaaagtcgttggaatgttgcctgatatgattaatgtc 19008200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 24277317 - 24277162
Alignment:
Q  114 attgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgttt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| ||||  ||  |||| || |||  |||||| ||||||||| |||||||| |||||||    
T  24277317 attgcctgatatggata-tgtcgttgatttgacatttgaaattcctttattgaaactgaaattatccgttcattctctttgtccttgaagttatttgttt 24277219  T
Q  214 gtttatatatgttgtcagaagatgacaaactatactatcatagttt-gatagagaca 269  Q
    | || || | || || |||||| || ||| | |||||||| ||||| ||||||||||    
T  24277218 gcttctacacgtggttagaagaagataaagtgtactatcagagtttagatagagaca 24277162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 24502766 - 24502661
Alignment:
Q  112 atattgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgt 211  Q
    ||||||||| ||||| ||||||||||||||  ||||||||||||| |||| |||| ||| ||| | | ||||||| |  |||||| || |||||||||||    
T  24502766 atattgcctaatatggataatgtcgttgatgggacatttgaaattccttttctgcaactagaattttctgttcattccttttgtcattaaagttctttgt 24502667  T
Q  212 ttgttt 217  Q
    ||||||    
T  24502666 ttgttt 24502661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 25727622 - 25727571
Alignment:
Q  115 ttgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgc 166  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  25727622 ttgcctgatatgaataatgtcgttgattagacatttgaaattcctttactgc 25727571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 7321625 - 7321574
Alignment:
Q  40 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag 91  Q
    |||||||||||||||||||||| ||| ||||| |||||||||| ||||||||    
T  7321625 aggatttgagagacgttggagaagtgtcagcgtattaagagtccttgagaag 7321574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 25724534 - 25724471
Alignment:
Q  376 gatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    |||| ||| ||||||||||| | ||||||||||| ||||| ||||| |||||||||||||||||    
T  25724534 gatcctcaacttctgagtgatttcctttcttctggtccaaaatgttaacttctgattgaccttt 25724471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 24277083 - 24277009
Alignment:
Q  365 agtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||||||||||||||||| ||||||| | |||||||||| ||||||||  || |||| || |||||||||    
T  24277083 agtctaatgcagatcttcagcttgtgagtgaattcctttcttctaatccaagacattaacttttggttgaccttt 24277009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 24308969 - 24308928
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggaga 61  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  24308969 ttcaactccttatataggcaaggatttgagagacgttggaga 24308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 24269460 - 24269373
Alignment:
Q  73 attaagagtcgttgagaagtttcaaatcaaggacatttgatattgcctgatatgaataatgtcgttgatttgacatttgaaatttcttt 161  Q
    |||||||||| |||| ||| || |||| |||||| || |  ||||||||||||| ||| |||||||||||||||||| |||||| ||||    
T  24269460 attaagagtcattgaaaagctttaaataaaggacgttgggaattgcctgatatggata-tgtcgttgatttgacattcgaaattccttt 24269373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 18565058 - 18565125
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaa 90  Q
    |||| ||| |||||||||| ||||||||||||| |||||||| |||| |  ||||||||||||||||||||    
T  18565058 ttcagctccttatataggcaaggatttgagagatgttggaga-gtgcta--gcattaagagtcgttgagaa 18565125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 25727413 - 25727351
Alignment:
Q  376 gatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||||||||||||   |||||||||||||  || ||||| |||||||||||||||||    
T  25727413 gatcttcagcttctgagtgatctcctttcttctgat-taaaatgttaacttctgattgaccttt 25727351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 29757750 - 29757700
Alignment:
Q  40 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaa 90  Q
    |||||||||||||||||||||| ||  ||| |||||||||||| |||||||    
T  29757750 aggatttgagagacgttggagaagtatcagtgcattaagagtcattgagaa 29757700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 24308744 - 24308704
Alignment:
Q  399 cctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    |||||||| ||||||||| |||||||||||| |||||||||    
T  24308744 cctttcttttgatccaaggtgttgacttctggttgaccttt 24308704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 10646947 - 10646711
Alignment:
Q  75 taagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactgga 173  Q
    |||||||| |||||||| |||||||||||||  || | | |||||||| |||| ||||||||||||||| ||||||||||||| |||| |||  ||||||    
T  10646947 taagagtcattgagaagcttcaaatcaaggatgttgggtcattgcctgttatggataatgtcgttgattagacatttgaaattccttttctgtaactgga 10646848  T
Q  174 actatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagt-ttgatagagacagat 272  Q
    | ||||||||||| ||||||||| |||||||||||||||||||| || |  |  | |||||||||||||||||||||||| ||| ||| ||||||||| |    
T  10646847 attatttgttcattctctttgtccttgaagttctttgtttgtttctacagttacttagaagatgacaaactatactatcagagtcttggtagagacagct 10646748  T
Q  273 gcacaagagaacaaatctgatgtgacttctgggtccc 309  Q
     || || || |||| ||||| ||| ||||||||||||    
T  10646747 acaaaaaaggacaactctgacgtgtcttctgggtccc 10646711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 439
Target Start/End: Original strand, 5265142 - 5265551
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgcctgatatga 127  Q
    |||||||||| |||||||||||||||||| ||||||| ||  ||||||| | ||||||||||| || ||||||||||| || | |||||| || |||||     
T  5265142 ttatataggcaaggatttgagagacgttgaagaggtgtcat-gcattaaaattcgttgagaagctttaaatcaaggacgttgggatattgtctaatatgg 5265240  T
Q  128 ataat--gtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    |||||  |||||| |||  |||||||||||| ||||| ||| | || || |||||| |||| ||||||||||   | ||||||||| |||||  | | ||    
T  5265241 ataatatgtcgttaattaaacatttgaaattcctttgatgcaattgaaattatttggtcattctctttgtct---aggttctttgtctgtttccacacgt 5265337  T
Q  226 tgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtcccaaagagtcttatgttc 325  Q
     || ||||||||| ||||| |||||||| |||||||||||||||  | || ||||  |||||||||| ||| ||||||||||||  |||||||||||| |    
T  5265338 agttagaagatgaaaaactgtactatcagagtttgatagagacaactacagaagaagacaaatctgacgtggcttctgggtccctcagagtcttatgtac 5265437  T
Q  326 ttcagatcctggtgatcttcagagtctgacatccttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgact 425  Q
    ||| ||   || || || || ||||||    | || || ||||| ||  ||||||||||||||| |  ||||| ||||||||| ||||||  | ||||||    
T  5265438 ttcggagtttgatggtcatcggagtcttgtgttctacagagtctaatatagatcttcagcttcttaacgactaactttcttctaatccaatgtattgact 5265537  T
Q  426 tctgattgaccttt 439  Q
    ||||||||||||||    
T  5265538 tctgattgaccttt 5265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 1782883 - 1783174
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacattt-gatattgc 118  Q
    |||| ||| |||||||||  || ||||||||| ||||| | | ||| |||| ||||||||||||  ||||||||||||||||||||  ||| |  ||||     
T  1782883 ttcagctccttatataggaaagaatttgagagtcgttgaaaaagtgtcagcacattaagagtcgaagagaagtttcaaatcaaggatgtttagccattgt 1782982  T
Q  119 ctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgttta 218  Q
    | |||||| | ||||||||||||| ||||||||||||| |||| || | || |||| |||  |||||| ||||||||  |||||||||||||||| |||     
T  1782983 cggatatggacaatgtcgttgattagacatttgaaattcctttactacaacgggaattatccgttcattctctttgttcttgaagttctttgtttatttt 1783082  T
Q  219 tatatgttgtcagaagatgacaaactatactatcatagt-ttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtccc 309  Q
    || | || ||||||||| |||||| | |||||||| ||| ||||| ||||||  | || ||||| |||||| ||| ||| ||||||||||||    
T  1783083 tacacgtggtcagaagaggacaaattgtactatcagagtcttgattgagacatctacagaagaggacaaatatgacgtgtcttctgggtccc 1783174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 32957481 - 32957723
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatat 125  Q
    |||||||||| ||||  | |||||||||||||| |  || ||||||||| ||||||| | ||||| ||||||||||  |  || | | |||| |||||||    
T  32957481 ttatataggcaaggaaataagagacgttggagaagagtgtcagcgcatttagagtcgctaagaagcttcaaatcaataatgttgggtcattgtctgatat 32957580  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    | ||||||||||||||| |||||| |||||| ||||||||  ||||||| ||| |||||||  |||||||| |||||||||||||||||||| || ||||    
T  32957581 ggataatgtcgttgattagacattcgaaattcctttgctgaaactggaattatctgttcattatctttgtccttgaagttctttgtttgtttctacatgt 32957680  T
Q  226 tgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
     ||||||| | |||||| | || ||||| | |||||||||||||    
T  32957681 ggtcagaa-aagacaaattgtattatcagattttgatagagaca 32957723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 17891582 - 17891383
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt-tgatatt 116  Q
    |||||||| ||||||| || ||||||||||||||||||||||   ||| || |||||||||||||  ||||||| |||||||||||||  ||  |  |||    
T  17891582 ttcaactccttatataagcaaggatttgagagacgttggagaagagtgtcaacgcattaagagtcactgagaagcttcaaatcaaggatgttgggccatt 17891483  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
     ||||||||| ||||||| ||||||| ||||||||||||| ||||||||  ||||||| |||   |||||  |||||||| ||||| |||||||||||||    
T  17891482 acctgatatggataatgttgttgattagacatttgaaattcctttgctg-aactggaattatccattcattatctttgtccttgaaattctttgtttgtt 17891384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 269
Target Start/End: Complemental strand, 27707495 - 27707297
Alignment:
Q  71 gcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt-gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgac 169  Q
    ||||||||||||||||||||| ||||||||||| |  || ||| || |||||||||| ||| |  | |||||| ||||||||||||| ||| |||   ||    
T  27707495 gcattaagagtcgttgagaagcttcaaatcaagaaagttggatctttgcctgatatggatagttccattgattagacatttgaaattcctt-gctaaaac 27707397  T
Q  170 tggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    || || |||  ||| || || ||||||||||||||||||||||||||| || |||| ||||||||| |||||| | |||||| | | |||||||||||||    
T  27707396 tgaaattatcagtttattctttttgtctttgaagttctttgtttgtttctacatgtggtcagaagaggacaaattgtactattagactttgatagagaca 27707297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 1783207 - 1783287
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    |||| |||||| |||||||| |||| |||||||| |||| ||||||||||||||||| || ||||||||||||||||||||    
T  1783207 cttccaagtctgatgcagattttcaacttctgagcgacttcctttcttctgatccaacatattgacttctgattgaccttt 1783287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 1777298 - 1777074
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt-tgatatt 116  Q
    |||| ||| |||||||||   ||||||||||||||||||||| |  || || | ||||| |||||||||||||| |||||||||||||| ||  |  |||    
T  1777298 ttcagctccttatataggtagggatttgagagacgttggagaagagtgtcaacacattatgagtcgttgagaagcttcaaatcaaggacgttgggccatt 1777199  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
    | || ||||| ||||| ||  ||| | | ||||||||| | ||||||||  ||||||| ||    ||||| ||||||||| |||||||||||||| |||     
T  1777198 gactaatatggataatttcaatgaatggtcatttgaaa-tcctttgctgaaactggaagtaccccttcattctctttgtccttgaagttctttgtctgtg 1777100  T
Q  217 tatatatgttgtcagaagatgacaaa 242  Q
    | || | || ||||||||| ||||||    
T  1777099 tttacacgtggtcagaagaagacaaa 1777074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 12733585 - 12733667
Alignment:
Q  133 gtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
    |||||||||  |||||||||||||  ||| |||| ||||| | |||| |||||| || |||||| ||||||||||||||||||    
T  12733585 gtcgttgatgggacatttgaaattcatttactgcaactgggattattcgttcattctttttgtccttgaagttctttgtttgt 12733667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 26822550 - 26822611
Alignment:
Q  378 tcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    |||||||||||||||| ||  |||||||| ||||||||| |||| ||||||| |||||||||    
T  26822550 tcttcagcttctgagtaacatcctttcttttgatccaaggtgtttacttctggttgaccttt 26822611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 443
Target Start/End: Complemental strand, 7185494 - 7185427
Alignment:
Q  377 atcttcagcttctgagtgac-tacctttcttctgatccaagatgttgacttctgattgacctttttca 443  Q
    |||||||||||||||||| | | | ||||||| ||| ||||||||||||||||| ||||| |||||||    
T  7185494 atcttcagcttctgagtggcgttcttttcttccgatacaagatgttgacttctggttgacatttttca 7185427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 31272844 - 31272907
Alignment:
Q  184 catgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactata 247  Q
    |||||||||||||||| || |||||| ||||||| | ||||| ||||||||| |||||| ||||    
T  31272844 catgctctttgtctttcaaattctttatttgtttctgtatgtggtcagaagaagacaaaatata 31272907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 22975164 - 22975243
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtg--ccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||   ||||||||||| |||||||| | |  ||| | ||||||||| |||||||||| ||||||||||||||    
T  22975164 ttatataggcagagatttgagagatgttggagaagagttccaacacattaagagccgttgagaagcttcaaatcaaggac 22975243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 26822368 - 26822452
Alignment:
Q  188 ctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagat 272  Q
    ||||||||| |||||||||||||||||||| || |  | || |||||| || ||| | |||||||| | ||||||||||| ||||    
T  26822368 ctctttgtccttgaagttctttgtttgtttctacacatagtgagaagaagataaattgtactatcagattttgatagagatagat 26822452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 269
Target Start/End: Complemental strand, 30806047 - 30805815
Alignment:
Q  41 ggatttgagagacgttggagag--gtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttga-tattgcctgatatgaataatgtcgt 137  Q
    |||||||||| ||||| ||||   ||| ||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||| ||||||||||    
T  30806047 ggatttgagatacgtttgagaatagtgtcagcgcattaagagtcgttgagaagcttcaaatcaaggacattggaccattgcctgatatggataatgtcgt 30805948  T
Q  138 tgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatg 237  Q
    ||||| |||||| |||||| ||||  ||  ||| ||| |||  ||||||  ||||| || |||||||||||||||||||| || | || | ||||||| |    
T  30805947 tgattagacattcgaaattcctttcatgaaactagaattatccgttcattgtctttctccttgaagttctttgtttgtttctacacgtggccagaagaag 30805848  T
Q  238 acaaactatactatcatagt-ttgatagagaca 269  Q
    ||||| | |||||||| ||| ||||||||||||    
T  30805847 acaaattgtactatcagagtattgatagagaca 30805815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 19003357 - 19003157
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||||||| |||||||||| ||| |||||||||| ||| ||| |  || | |  |||||||||||||||||||| |||||||||||||  || ||  |||    
T  19003357 ttcaactccttatataggcaaggttttgagagacattgaagaagagtggcggtacattaagagtcgttgagaagcttcaaatcaaggatgttagaccatt 19003258  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
     ||| ||||||||||||||||||||| |||||||||||||||||||||   |||| || |||  |||||| ||||||||| ||||| |||||||||||||    
T  19003257 acctaatatgaataatgtcgttgattagacatttgaaatttctttgctaaaactgaaattatccgttcattctctttgtccttgaaattctttgtttgtt 19003158  T
Q  217 t 217  Q
    |    
T  19003157 t 19003157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 18932920 - 18932728
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttgga-gaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attg 117  Q
    |||||||| ||| |||||| || |||||||||||||| || ||||||||| | ||||||||||| | ||||||||||||||||| || ||| ||  |||     
T  18932920 ttcaactccttaaataggcaagaatttgagagacgtttgaagaggtgccaacacattaagagtcatcgagaagtttcaaatcaatgatattggaccattt 18932821  T
Q  118 cctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttg 210  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||| |||| |||| || ||| ||||||| | ||||||| || ||||||||||    
T  18932820 cctgatatggataatgtcgttgattaggcatttgaaattcctttactgcaactgtaattatatgttcattcactttgtcctttaagttctttg 18932728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 26897932 - 26898225
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||||||| |||||||||| |||||||||||||||||| ||| |  || || |||||||||||||||||||||  || ||||||| ||  || ||  |||    
T  26897932 ttcaactccttatataggcaaggatttgagagacgttgaagaagcgtgtcaacgcattaagagtcgttgagaaactttaaatcaaagatgttagaccatt 26898031  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
    |||| ||||| ||||| || |||||| |||||||||||||||||| |||  ||| ||| |||||||| ||  | |||||| ||| |||||||||| ||||    
T  26898032 gccttatatggataatctcattgattagacatttgaaatttctttactgaaactagaattatttgttaattatttttgtccttgcagttctttgtatgtt 26898131  T
Q  217 tatatatgttgtcagaagatgacaaactatactatcatagt-ttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtccc 309  Q
    | || | || ||||||||| |||||| | |||||||| ||| ||||||| |||   |||| || || |||||| ||||||  ||| ||||||||    
T  26898132 tctacacgtggtcagaagaagacaaattgtactatcagagtcttgatagggacgactgcataaaaggacaaatttgatgtatcttttgggtccc 26898225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 17496871 - 17496646
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||||||| || |||||||  ||||||||||||| ||||||| |  || ||||||||||||||||||||| ||| ||||||||||| ||| | |   |||    
T  17496871 ttcaactccttttataggcagggatttgagagacattggagaagagtgtcagcgcattaagagtcgttgaaaagcttcaaatcaagaacaatagggcatt 17496772  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
    |||||||||| ||||| ||||||| | | ||||||||||| ||||| ||  |||| || | | ||||| | ||||||||| ||||| |||||||| ||||    
T  17496771 gcctgatatggataatttcgttgaatagtcatttgaaattcctttgttgaaactgaaaatttctgttctttctctttgtccttgaatttctttgtatgtt 17496672  T
Q  217 tatatatgttgtcagaagatgacaaa 242  Q
    | || |||| ||||||||| ||||||    
T  17496671 tctacatgtggtcagaagaagacaaa 17496646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 12397690 - 12397868
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||| ||| |||||||||| |||||||||||||||||| ||| |  ||  |  |||||||||||||||||||||||||||||||||||  || ||| |||    
T  12397690 ttcagctccttatataggcaaggatttgagagacgttgaagaagagtgttaatgcattaagagtcgttgagaagtttcaaatcaaggatgttggatcatt 12397789  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgt 195  Q
    |||||||||| |||||||| ||||||  ||||||||||||  |||||||   ||  |||||| ||||||| ||||||||    
T  12397790 gcctgatatggataatgtcattgattaaacatttgaaattcatttgctgaagctaaaactatctgttcattctctttgt 12397868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 33438813 - 33439059
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatat 125  Q
    ||||||| || | |||| ||||||||||||||| |  || ||||||||||||| |||||||||| ||||||||||||||  || | | ||||||||||||    
T  33438813 ttatataagcaaagattagagagacgttggagaagagtgtcagcgcattaagaatcgttgagaaatttcaaatcaaggaagttgggtcattgcctgatat 33438912  T
Q  126 gaataatgtcgttgatttgacatt--tgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatat 223  Q
    | |||||||| |||||| ||||||  | |  ||| |||||||  ||||||| |||  | ||||  |||||||| ||||||||||||||||| ||||| |     
T  33438913 ggataatgtcattgattagacattcataatttttttttgctgaaactggaattatccgctcattatctttgtccttgaagttctttgtttgcttatacac 33439012  T
Q  224 gttgtcagaagatgacaaactatactatcatagt-ttgatagagaca 269  Q
    || ||||||||| || ||| | || ||||| ||| ||||||||||||    
T  33439013 gtggtcagaagaagataaattgtattatcagagtcttgatagagaca 33439059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 30805759 - 30805679
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||| ||| |||||||||||||  |||||||  ||||||||||||||||||||||| ||||||| |||||||||    
T  30805759 cttcaaagtctgatgtagatcttcagcttacgagtgacatcctttcttctgatccaagatgttcacttctggttgaccttt 30805679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 17316609 - 17316523
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaagg 104  Q
    |||||||  |||||||||| |||||||||||||||||||||| |  || ||||||||||||||||||||||||  ||||||||||||    
T  17316609 ttcaacttcttatataggcaaggatttgagagacgttggagaagagtgtcagcgcattaagagtcgttgagaatcttcaaatcaagg 17316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 12669324 - 12669098
Alignment:
Q  19 attcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-at 115  Q
    |||| |||| || |||||||  |||||||||||||||||| || |  || || |||||| ||||||||||||||| |||||||||||||| || | | ||    
T  12669324 attcgactccttttataggcatggatttgagagacgttggtgaagagtgtcaacgcatttagagtcgttgagaagcttcaaatcaaggacgttgggtaat 12669225  T
Q  116 tgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
    ||||||||||| |||||   ||||| | | ||||  |||||  |||  ||  ||||||| |||   ||||| ||||||||| |||||||||||||| |||    
T  12669224 tgcctgatatggataattcggttgaatagtcattcaaaattcttttattgaaactggaagtatccattcattctctttgtccttgaagttctttgtctgt 12669125  T
Q  216 ttatatatgttgtcagaagatgacaaa 242  Q
    || |  |||| ||||||||| ||||||    
T  12669124 ttttgcatgtggtcagaagaagacaaa 12669098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 17103459 - 17103360
Alignment:
Q  112 atattgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgt 211  Q
    ||||| ||||||||  |||||| | |||| | ||||||||||||||||||||||| ||||||| ||| ||||||| |||||| || || |||||||||||    
T  17103459 atatttcctgatatagataatgccattgaatagacatttgaaatttctttgctgcaactggaattatctgttcattctctttatccttaaagttctttgt 17103360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 22666140 - 22666365
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtg--ccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||| |||||||||||||| | ||||||||||| |||| | | | |  | ||||||||||||||| |||||||| ||  |||||||||  || ||  |||    
T  22666140 ttcagctctttatataggcaaagatttgagagatgttgtataagagttctagcgcattaagagtcattgagaagctttgaatcaaggatgttagaccatt 22666239  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
    |||||| ||| ||||| || | || | | |||||||||||| || |||   ||||||| ||| ||||||| ||||||||| ||||||||||||||| |||    
T  22666240 gcctgacatggataatttcatcgaatagtcatttgaaattttttcgcttaaactggaattatctgttcattctctttgtccttgaagttctttgttcgtt 22666339  T
Q  217 tatatatgttgtcagaagatgacaaa 242  Q
    | || | || || |||||| ||||||    
T  22666340 tctacacgtggttagaagaagacaaa 22666365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 33439130 - 33439210
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||| ||||||||||| ||||| |||||  || ||||||||||||||||||| |||||||| || || ||||||    
T  33439130 cttcaaagtctgatgcagatctttagcttatgagttgcttcctttcttctgatccaagacgttgacttatggtttaccttt 33439210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 14580868 - 14580796
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaa 102  Q
    ||||||| || ||||||| ||||||||||||||| || ||||||||||||||| ||||||||  ||||||||||    
T  14580868 ttatatatgcaaggattttagagacgttggagag-tgtcagcgcattaagagttgttgagaaacttcaaatcaa 14580796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 15440586 - 15440670
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag-tttcaaatcaag 103  Q
    |||| ||| |||||||||| | |||||||||||| ||||||| ||| ||| |||||||||||| |||||||| | ||||||||||    
T  15440586 ttcagctccttatataggcaaagatttgagagacattggagaagtgtcagtgcattaagagtctttgagaagctatcaaatcaag 15440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 25791679 - 25791564
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag-tttcaaatcaaggacatttg-atattg 117  Q
    |||||||  ||||||||||  ||||||||||||||||||| | ||| || | ||||||||||| |||||||| | ||||||||| ||| || | ||||||    
T  25791679 ttcaacttcttatataggcatggatttgagagacgttggaaaagtgtcaactcattaagagtccttgagaagctatcaaatcaa-gacgttggaatattg 25791581  T
Q  118 cctgatatgaataatgt 134  Q
    |||||||||| ||||||    
T  25791580 cctgatatgattaatgt 25791564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 19019355 - 19019132
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||| ||| |||||||||| | ||||| || ||||||| ||| |  ||||| |||||||||| ||||||||||| ||||||||||||   |||| | |||    
T  19019355 ttcatctccttatataggcaaagattttagggacgttgaagaagagtgccaccgcattaagaatcgttgagaagattcaaatcaagggtgtttggtcatt 19019256  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
    |||||||||| |||||   ||||| | |  ||| |||||||||||||||  | ||||| |||  ||| ||  ||| |||| |||||||||||| | | ||    
T  19019255 gcctgatatggataattctgttgaatagctattcgaaatttctttgctgaaattggaagtatccgtttat--tctctgtccttgaagttctttatctatt 19019158  T
Q  217 tatatatgttgtcagaagatgacaaa 242  Q
    | ||||||| ||||| ||| ||||||    
T  19019157 tctatatgtggtcaggagaagacaaa 19019132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 31584517 - 31584458
Alignment:
Q  45 ttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag-tttcaaatcaag 103  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||| | ||||||||||    
T  31584517 ttgagagacgttggagaagtgtcagcgcattaagagtccttgagaagctatcaaatcaag 31584458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 22666541 - 22666583
Alignment:
Q  401 tttcttctgatccaagatgttgacttctgattgacctttttca 443  Q
    ||||||||||||||||||||||||||||  ||||| |||||||    
T  22666541 tttcttctgatccaagatgttgacttctagttgacttttttca 22666583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 437
Target Start/End: Complemental strand, 15650937 - 15650901
Alignment:
Q  401 tttcttctgatccaagatgttgacttctgattgacct 437  Q
    |||||| |||||||||||||||||||||| |||||||    
T  15650937 tttcttttgatccaagatgttgacttctggttgacct 15650901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 16636974 - 16637022
Alignment:
Q  61 aggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt 109  Q
    |||||||||||||||||||||| |||||||   ||||||||| ||||||    
T  16636974 aggtgccagcgcattaagagtccttgagaaacatcaaatcaaagacatt 16637022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 17316452 - 17316372
Alignment:
Q  189 tctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    |||||||| || |||||| |||||||||| || |  | ||||||||| |||||| | |||||||| | |||||||||||||    
T  17316452 tctttgtccttaaagttccttgtttgtttctacacatggtcagaagaagacaaattgtactatcagactttgatagagaca 17316372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 19018975 - 19018923
Alignment:
Q  377 atcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctg 429  Q
    |||||||||||||||| | |  |||||  ||||||||||||||||||||||||    
T  19018975 atcttcagcttctgagaggcgtccttttctctgatccaagatgttgacttctg 19018923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 37283530 - 37283437
Alignment:
Q  42 gatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat--attgcctgatatgaataat 132  Q
    ||||||||||||||||||||   ||| || ||||| ||||||| |||||||| |||| |||||||||  |||||  |||||| ||||||||||||    
T  37283530 gatttgagagacgttggagaagagtgtcaacgcataaagagtcattgagaagcttcagatcaaggac-gttgatccattgccggatatgaataat 37283437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 35666281 - 35666040
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgcctgatatga 127  Q
    |||||||| | |||||||||||||||||| ||||||  || || ||||||||||||||||||  ||||| ||||||||||  | ||||||||| |||||     
T  35666281 ttatatagacaaggatttgagagacgttgaagaggttacatcgtattaagagtcgttgagaaacttcaa-tcaaggacatcgggatattgcctcatatgg 35666183  T
Q  128 ataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttg 227  Q
    |||||| | |||||| ||||||||||||| ||||| ||| || |||| |||  |||  | |||||| || |||||||||||||| | ||| || |||| |    
T  35666182 ataatgacattgattagacatttgaaattcctttgttgcaacaggaattatccgttagttctctttttccttgaagttctttgtctatttctacatgtgg 35666083  T
Q  228 tcagaagatgacaaactatactatcatagtttgatagagacag 270  Q
    || |||||||||||| | |||||||| ||||||||| ||||||    
T  35666082 tcggaagatgacaaattgtactatcagagtttgatatagacag 35666040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 296
Target Start/End: Complemental strand, 16587261 - 16587044
Alignment:
Q  80 gtcgttgagaagtttcaaatcaaggacatttgatatt-gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactat 178  Q
    |||||||||||| |||||||||||||  || | | || | ||||||||||||||   ||||||| ||||||||||||| ||||||    ||| ||| |||    
T  16587261 gtcgttgagaagcttcaaatcaaggatgttgggtctttgtctgatatgaataattctgttgattagacatttgaaattcctttgcataaactagaattat 16587162  T
Q  179 ttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaa 278  Q
    |  ||||| ||||||||| ||||||||| |||||||||| || |||| ||||||||| ||||||||||||||||| | |||| ||||||||  | || ||    
T  16587161 tctttcattctctttgtccttgaagttcattgtttgtttgtacatgtggtcagaagaagacaaactatactatcagactttggtagagacaactacataa 16587062  T
Q  279 gagaacaaatctgatgtg 296  Q
    ||| ||||||||||||||    
T  16587061 gaggacaaatctgatgtg 16587044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 19878284 - 19877940
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgc 118  Q
    |||| ||| |||||||||| ||||||| |||| | |   ||||| | | |||||||||||||||||||||||  || |||||||||  || | ||||| |    
T  19878284 ttcagctccttatataggcaaggattttagagccataaaagaggcgtctgcgcattaagagtcgttgagaagcatctaatcaaggagtttgggatatttc 19878185  T
Q  119 ctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgttta 218  Q
    |||||||| ||||||||||||||| || |||||||||| ||||| | | ||| ||| |||   |||||  |||||||| ||||| || ||||| |||||     
T  19878184 ctgatatggataatgtcgttgattagatatttgaaattcctttgtttcaactagaattatccattcattatctttgtccttgaatttttttgtctgtttc 19878085  T
Q  219 tatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtcccaaagagtct 318  Q
    |  |  | ||||||||||||||||   ||||||||  |||||||||||| |  | || ||||  |||||||||| ||| ||| |||| |||  |||||||    
T  19878084 tccacatggtcagaagatgacaaatggtactatcagggtttgatagagataactacaaaagaagacaaatctgacgtggcttttgggcccctcagagtct 19877985  T
Q  319 tatgttcttcagatcctggtgatcttcagagtctgacatccttca 363  Q
    | ||||||| |||  ||| || |||| ||||||||  ||||||||    
T  19877984 tctgttctttagagtctgatggtctttagagtctggtatccttca 19877940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 331
Target Start/End: Complemental strand, 16917586 - 16917320
Alignment:
Q  67 cagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt-gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctg 165  Q
    ||||||||||||||||||||||||| ||||||||| |||  || ||  || || ||||||| ||||  ||||||||| ||||||||||||| ||||||||    
T  16917586 cagcgcattaagagtcgttgagaagattcaaatcacggatgttagaactttgcatgatatgtataaattcgttgattagacatttgaaattcctttgctg 16917487  T
Q  166 cgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagt-ttgatag 264  Q
      |||| || |||  | |||| ||||||||| ||||| ||| |||||||| | || | || |||| |||| || ||| | |||||||| ||| |||||||    
T  16917486 aaactgaaagtatccgatcattctctttgtccttgaaattccttgtttgtatctacacgtggtcaaaagaagaaaaattgtactatcagagtcttgatag 16917387  T
Q  265 agacagatgcacaagagaacaaatctgatgtgacttctgggtcccaaagagtcttatgttcttcaga 331  Q
     ||||  | || ||||  | |||||||||||| ||||||| ||||  ||  ||||||||||||||||    
T  16917386 cgacaactacataagaagaaaaatctgatgtggcttctggatccctcaggctcttatgttcttcaga 16917320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 27765823 - 27765607
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatat 125  Q
    ||||||||| |||||||||||||| |||||||| |  || || || ||||||||||||||||||| ||||||||||| ||||| | |  ||| || ||||    
T  27765823 ttatataggttaggatttgagagatgttggagaagagtgtcatcgtattaagagtcgttgagaagcttcaaatcaagaacattaggtctttgtcttatat 27765724  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    | |||||| ||||||||  |||||  ||||| ||||| ||   | |||| |||  |||||| |||| |||| |||||||||||||||||||| || | ||    
T  27765723 ggataatgacgttgattatacattcaaaattcctttgttgaagccggaattatccgttcattctctctgtccttgaagttctttgtttgtttctacacgt 27765624  T
Q  226 tgtcagaagatgacaaa 242  Q
     ||||||||| ||||||    
T  27765623 ggtcagaagaagacaaa 27765607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 13073541 - 13073611
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaa 90  Q
    |||||||| |||||||||| |  |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  13073541 ttcaactccttatataggcaaaaatttgagagacgttagagaggtgtcagcgcattaagagtcgttgagaa 13073611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 21748720 - 21748547
Alignment:
Q  41 ggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatatgaataatgtcgt 137  Q
    ||||| |||||||||| |||| |  || ||||| ||||||||||||||| ||| |||||||||||||| || ||| ||||||| ||||| |||||  |||    
T  21748720 ggattcgagagacgttagagaagagtgtcagcgaattaagagtcgttgaaaagcttcaaatcaaggacgttggatcattgcctaatatggataatcccgt 21748621  T
Q  138 tgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgt 211  Q
    ||| | | |||||||||||  |||||||  |||||||  |||| ||||| ||||||||  |||||||| |||||    
T  21748620 tgaatagtcatttgaaattcatttgctgaaactggaataatttattcattctctttgtgcttgaagttatttgt 21748547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 42256160 - 42256356
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgc 118  Q
    |||||||| ||||||| || | |||||||||||||||||| | ||| || |||||||||| ||||||||||| |||| ||||| ||| || | |||||      
T  42256160 ttcaactccttatatatgcaatgatttgagagacgttggacaagtgtcaacgcattaagattcgttgagaagcttcacatcaaagacgttagaatattat 42256259  T
Q  119 ctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
     || |||| ||||| || |||||| ||||||||||||| |||| |||| | | ||| ||   |||||| |  |||||  ||||||||||||||||||    
T  42256260 atggtatggataatatcattgattagacatttgaaattcctttactgcaattagaattacccgttcattccttttgtacttgaagttctttgtttgt 42256356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 29409516 - 29409719
Alignment:
Q  41 ggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatattgcctgatatgaataatgtcgtt 138  Q
    |||||||||||||||| || | |  ||||||||||||||||||| |||||||  |||||||||||||| |  |  ||||| ||||||| ||||| | |||    
T  29409516 ggatttgagagacgttagaaaagagtgccagcgcattaagagtctttgagaaacttcaaatcaaggacgtggggcattgcatgatatggataattttgtt 29409615  T
Q  139 gatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatga 238  Q
    |  | | ||||||||| | ||||||||  | || || ||||||||||| ||||||| |  | |||||||||||  |||| || | || ||||||||| ||    
T  29409616 ggatagtcatttgaaaatcctttgctgaaattgaaagtatttgttcattctctttgcccctaaagttctttgtccgtttctacacgtggtcagaagaaga 29409715  T
Q  239 caaa 242  Q
    ||||    
T  29409716 caaa 29409719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 17417661 - 17417573
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    |||| ||| |||||||| |  ||||||||||||||||||||| |  ||||||||||| |||||| ||||||||| |||| |||||||||    
T  17417661 ttcagctccttatatagacatggatttgagagacgttggagaagagtgccagcgcataaagagttgttgagaagcttcatatcaaggac 17417573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 21548508 - 21548432
Alignment:
Q  32 tataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    |||||||  ||||||||||| ||||||||| |  ||||||| |||||||||||||||||||| ||||||| ||||||    
T  21548508 tataggcagggatttgagaggcgttggagaagagtgccagcacattaagagtcgttgagaagcttcaaatgaaggac 21548432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 28449392 - 28449312
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||||| |||||||||||||| |||  |||||||  |||||||||||||||||  ||||||||||  |||||||||    
T  28449392 cttcagagtctgatgcagatcttcaggttcgaagtgacttgctttcttctgatccaaggcgttgacttctagttgaccttt 28449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 22311992 - 22311913
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||  ||||||||||||| ||||||| |  || |||||||||||||||| || | ||| ||||||||||||||    
T  22311992 ttatataggcagggatttgagagacattggagaagagtgtcagcgcattaagagtcattcacaagcttcaaatcaaggac 22311913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 19564535 - 19564613
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaagga 105  Q
    ||||||||||  |||||| |||||||||||||| |  |||||| |||| |||||||||||||| | || ||||||||||    
T  19564535 ttatataggcagggatttaagagacgttggagaagagtgccagagcataaagagtcgttgagacgcttaaaatcaagga 19564613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 21748348 - 21748285
Alignment:
Q  377 atcttcagcttctgagtgactaccttt-cttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||| |||||||||| |  ||||| ||||||||||||||||||||||| || |||||||||    
T  21748348 atcttcaacttctgagtggcgtccttttcttctgatccaagatgttgacttgtggttgaccttt 21748285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 23959297 - 23959356
Alignment:
Q  40 aggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaat 99  Q
    |||||||||||||  |||||||||||| |||| ||||||||| |||| |||| |||||||    
T  23959297 aggatttgagagatattggagaggtgcaagcgtattaagagttgttgtgaagcttcaaat 23959356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 35666023 - 35665968
Alignment:
Q  380 ttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgac 435  Q
    ||||| |||||| ||||| | ||||||||||||||| ||||||||||||| |||||    
T  35666023 ttcagtttctgaatgacttcatttcttctgatccaaaatgttgacttctggttgac 35665968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 22311411 - 22311373
Alignment:
Q  401 tttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22311411 tttcttctgatccaatatgttgacttctggttgaccttt 22311373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 25564063 - 25564001
Alignment:
Q  188 ctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatacta 250  Q
    |||||||| |||||| |||||||||||||| || | || ||||||||| |||||| |||||||    
T  25564063 ctctttgtttttgaatttctttgtttgtttctacacgtggtcagaagaagacaaattatacta 25564001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 29409926 - 29409964
Alignment:
Q  401 tttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  29409926 tttcttctgatccaagatgttgacttctggttgaacttt 29409964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 28449538 - 28449425
Alignment:
Q  180 tgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagt-ttgatagagacagatgcacaa 278  Q
    ||||||| ||||||||| || |||||||||||| |||| || | || ||||||||| |||| | | |||||||| ||| |||||||||| | || || ||    
T  28449538 tgttcattctctttgtcctttaagttctttgttggtttctacacgtggtcagaagaagacacattgtactatcaaagtcttgatagagaaatatacaaaa 28449439  T
Q  279 gagaacaaatctga 292  Q
    ||| | ||||||||    
T  28449438 gaggaaaaatctga 28449425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 25916815 - 25916737
Alignment:
Q  29 ttatataggctaggatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||  |||||||||||| ||| ||||   ||||||||  | ||||||||||||||||| ||||||||||||||    
T  25916815 ttatataggcagggatttgagagatgtttgagaagagtgccagcaga-taagagtcgttgagaagcttcaaatcaaggac 25916737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 266
Target Start/End: Complemental strand, 11704146 - 11703949
Alignment:
Q  70 cgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcga 168  Q
    |||||| |||||||||| |||| ||||||||||| || || ||| ||||||| ||||  ||||||| ||||||| || |||||||| | ||||||||  |    
T  11704146 cgcatttagagtcgttgtgaagcttcaaatcaagcacgttggattattgcctaatatagataatgttgttgattagatatttgaaaatcctttgctgaaa 11704047  T
Q  169 ctggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagag 266  Q
    |||||| |||| |||||| ||||||||  ||||||||||||||||||||||| ||||  || ||||| || ||||| ||||||||||  |||||||||    
T  11704046 ctggaattattcgttcattctctttgtacttgaagttctttgtttgtttatacatgtgctcggaagaagagaaactgtactatcatacgttgatagag 11703949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 4097984 - 4097759
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgcctgatat 125  Q
    |||||||||| || ||| ||||||||||||||| |  || || |||||||||||||||||| || ||| ||||||||||| || | | ||||||||||||    
T  4097984 ttatataggcaagaattcgagagacgttggagaagagtgtcaacgcattaagagtcgttgataaattttaaatcaaggacgttgggaaattgcctgatat 4097885  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    | |||||||| |||||| || |||||||||| ||||| ||    ||||| |||  |||||| ||||||||| |||||||||||||||| ||| || ||||    
T  4097884 ggataatgtctttgattagaaatttgaaattcctttgttgaatatggaattatcggttcattctctttgtccttgaagttctttgtttatttctacatgt 4097785  T
Q  226 tgtcagaagatgacaaactatactat 251  Q
     |||||| ||  ||||||| ||||||    
T  4097784 ggtcagatgaacacaaactgtactat 4097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 4312253 - 4312675
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttga--tat 115  Q
    ||||||||||||||||||| |||||||||||||||||||||  |  || ||||||| ||||| |  |||||||| ||||||||||| ||  ||||    |    
T  4312253 ttcaactctttatataggcaaggatttgagagacgttggagtagaatgtcagcgcagtaagacttattgagaagcttcaaatcaagaac-gttgaccctt 4312351  T
Q  116 tgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
    || |||||||| ||| | |||||||||  ||||||||||||  |||||    ||||||| ||| || ||||  | |||| | |||||||| |||||||||    
T  4312352 tgtctgatatggatagtttcgttgattaaacatttgaaattcttttgcaaaaactggaattatctggtcattttatttgcccttgaagttatttgtttgt 4312451  T
Q  216 ttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtccc-aaaga 314  Q
    || || |||| || |||||| || ||||| |||||||| | |||||||||||||  | || ||||| |||||||||| |||   ||||||||||  ||||    
T  4312452 ttctacatgtggttagaagaagataaactctactatcagactttgatagagacaactacataagaggacaaatctgacgtggagtctgggtccctcaaga 4312551  T
Q  315 gtcttatgttcttcagatcctggtgatcttcagagtctgacatccttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatcca 414  Q
     |||||||| |||| ||   ||  ||| ||  ||||||||  | ||||| ||||| |||  ||| ||||||||  |||| || ||  |||||||||||||    
T  4312552 -tcttatgtacttctgagtttgaagatttttcgagtctgatgttcttcagagtctgatgaggattttcagctttagagtaacaactattcttctgatcca 4312650  T
Q  415 agatgttgacttctgattgaccttt 439  Q
    || ||||||||| ||||||||||||    
T  4312651 aggtgttgacttttgattgaccttt 4312675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 10815013 - 10814760
Alignment:
Q  19 attcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt 116  Q
    ||||| ||| ||||||| || ||||||||||||| |||||||| |  || || || |||||||||| |||||||| ||||||||||| |  ||||   ||    
T  10815013 attcagctccttatatatgcaaggatttgagagatgttggagaagaatgtcaacgtattaagagtcattgagaagcttcaaatcaagaatgtttgccctt 10814914  T
Q  117 -gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
     || ||||||| |||||  |||| ||| ||||||||||||| |||||| |  |||| || |||  |||||| ||||||||| || |||||||||||||||    
T  10814913 tgcttgatatggataattccgttaattagacatttgaaattcctttgcagaaactgaaattatccgttcattctctttgtcctttaagttctttgtttgt 10814814  T
Q  216 ttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    || || | || |||||||   |||||| |||||||||| | |||||||| ||||    
T  10814813 ttctacacgtggtcagaatgagacaaattatactatcagactttgatagtgaca 10814760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 21746936 - 21747129
Alignment:
Q  18 cattcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atatt 116  Q
    |||||||||| ||||||||||  |||||||| |||||||| ||| ||| |||| |||||||||||||||| ||| || |||  |||| |||| | |||||    
T  21746936 cattcaactccttatataggcatggatttgaaagacgttgaagaagtgtcagcacattaagagtcgttgaaaagctttaaactaagggcattggaatatt 21747035  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
     ||||||||| ||||||||||| | | |||||||||||||  |||| ||| ||||||| |||    |||     |||||||||||||||||||||||||    
T  21747036 acctgatatggataatgtcgttcaatagacatttgaaattcgtttgttgcaactggaattatactgtca-----tttgtctttgaagttctttgtttgt 21747129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 17291442 - 17291555
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttg-atattgc 118  Q
    |||||||| |||||||||  || |||||||||||||||||||||| |||  |||||||||||||||||||||  ||||||||| |||||| | || ||||    
T  17291442 ttcaactccttatataggaaagaatttgagagacgttggagaggttccaatgcattaagagtcgttgagaagcatcaaatcaaagacattggaatgttgc 17291541  T
Q  119 ctgatatgaataat 132  Q
    ||||||||| ||||    
T  17291542 ctgatatgattaat 17291555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 269
Target Start/End: Original strand, 24575785 - 24575934
Alignment:
Q  120 tgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttat 219  Q
    ||||||| |||||||||||||  |||||||||||||| ||||| ||| ||||||| ||| ||||||| |  |||||| |||||||||||| ||| | |||    
T  24575785 tgatatggataatgtcgttgacgtgacatttgaaattcctttgatgcaactggaattatctgttcattccttttgtccttgaagttctttatttatatat 24575884  T
Q  220 atatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
      ||||  |||||||| |||||  | |||||||  ||| |||||||||||    
T  24575885 gcatgtgatcagaagaagacaagttgtactatctaagtatgatagagaca 24575934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 10821003 - 10821196
Alignment:
Q  19 attcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-at 115  Q
    ||||| || ||||||||||| | |||||||||||||| ||||| |  || |||||||||||||||| |||| ||| ||  ||||| |||  || ||  ||    
T  10821003 attcagctttttatataggcaaagatttgagagacgtcggagaagagtgtcagcgcattaagagtcattgaaaagctttgaatcatggatgttagaccat 10821102  T
Q  116 tgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttcttt 209  Q
    ||||||||||| ||||| ||||||| | | |||||||||||  |||||||  ||||||| |||| ||||||  |||||||| || |||| ||||    
T  10821103 tgcctgatatggataatttcgttgaatagccatttgaaattcttttgctgaaactggaattattcgttcattttctttgtccttaaagtccttt 10821196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 29031880 - 29031959
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt 109  Q
    |||||||||  ||||||||||||| ||||||||| |  ||||||||||||||||||| ||||| |||||||||| ||||||    
T  29031880 ttatataggaaaggatttgagagatgttggagag-tatcagcgcattaagagtcgttcagaagcttcaaatcaaagacatt 29031959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 19490838 - 19490905
Alignment:
Q  41 ggatttgagagacgttggagag--gtgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||||||||| ||||  |||||||||||||||||||| |||||||  ||| ||||||||||    
T  19490838 ggatttgagagacgttgcagagaagtgccagcgcattaagagtcattgagaatcttcgaatcaaggac 19490905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 13487931 - 13487837
Alignment:
Q  120 tgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
    ||||||| ||||||||||||||  |||||||||  |||||||||||| |||| || |||||||| || || |||||| |||||||| ||| |||||    
T  13487931 tgatatggataatgtcgttgataggacatttgat-tttctttgctgcaactgaaattatttgttaattctttttgtccttgaagttttttatttgt 13487837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 18615457 - 18615369
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtg--ccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    |||| ||| ||||||||||  ||||||||||||| ||||| | |||  ||| | |||||||||| ||| ||||| ||||||||||||||    
T  18615457 ttcagctccttatataggcagggatttgagagacattggaaaagtgtgccaccacattaagagttgttaagaagcttcaaatcaaggac 18615369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 5776 - 6019
Alignment:
Q  30 tatataggctaggatttgagagacgttggagagg---tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt-tgatattgcctgatat 125  Q
    ||||||| | ||||||||||||||||||||||     ||||| ||||||||||||| || ||||| ||||||||||| || || |    |||||| ||||    
T  5776 tatatagacaaggatttgagagacgttggagaacaaatgccaacgcattaagagtcatttagaagcttcaaatcaagaacgttatccctttgcctaatat 5875  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    ||||| |   ||||||| ||||||||||||| ||||||||  ||| ||| ||| | ||||| |||||||||  ||||||||||| ||||||| || | ||    
T  5876 gaatagttctgttgattagacatttgaaattcctttgctgaaacttgaattatctattcattctctttgtccctgaagttctttctttgtttttacacgt 5975  T
Q  226 tgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    |||||||||| |||||||| || ||||| | |||||||||||||    
T  5976 tgtcagaagaagacaaactgtattatcaaattttgatagagaca 6019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 19053089 - 19053478
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-att 116  Q
    |||||||| |||||||||| |||||| |||  |||||||||| |  ||||| | |||||||||||||| ||||| |||||||||||| | || |   |||    
T  19053089 ttcaactccttatataggcaaggattagaggaacgttggagaagagtgccaacacattaagagtcgttaagaagcttcaaatcaagggcgttgggccatt 19053188  T
Q  117 gcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtt 216  Q
    |||||||||| |||||||| |||||| ||  || |||||| |||||||   | || || ||  ||||||| ||||| ||| |||||||||||||||||||    
T  19053189 gcctgatatggataatgtcattgattaga--ttcgaaattcctttgctaaaattgaaattacatgttcattctcttggtccttgaagttctttgtttgtt 19053286  T
Q  217 tatatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatctgatgtgacttctgggtcccaaagagt 316  Q
    | |  | || ||||||||| || ||||||||| ||||          ||||||  | || ||||| ||||||||||   ||||||| |||||   ||  |    
T  19053287 tctgcacgtggtcagaagaagataaactatacaatca----------gagacaactacagaagaggacaaatctgacacgacttctaggtccatcaggat 19053376  T
Q  317 cttatgttcttcagatcctggtgatcttcagagtctgacatccttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaag 416  Q
    ||| ||| |||||||  || | | |||||||| |||||    ||||| ||||| |||||||||||||||||||||||| || |||||||| |||||||||    
T  19053377 cttctgtacttcagagtctagaggtcttcagattctgatgctcttcagagtctgatgcagatcttcagcttctgagtggcttcctttcttatgatccaag 19053476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 296
Target Start/End: Complemental strand, 17474322 - 17474053
Alignment:
Q  29 ttatataggctaggatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatat 125  Q
    |||||||||| |||||||||||||||||| |||   ||| ||||||||||||| | ||||| ||| ||||||||| |||| || |||  ||||| ||||     
T  17474322 ttatataggcaaggatttgagagacgttgaagaagagtgtcagcgcattaagatttgttgaaaagcttcaaatcagggacgttggatctttgccggatag 17474223  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgt 225  Q
    | |||||||| |||||| || |||  ||||| ||||| ||  |||| || |||||||||||  |||| ||| ||||| ||  |||||||||| ||   ||    
T  17474222 ggataatgtcattgattagatattcaaaattcctttgttgaaactgaaattatttgttcattttcttcgtccttgaaatttcttgtttgtttcta-ccgt 17474124  T
Q  226 tgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaagagaacaaatctgatgtg 296  Q
     || |||||| |||||||| |||||||| | |||||||||||||  | || ||||  ||||||||||||||    
T  17474123 ggttagaagaggacaaactgtactatcagactttgatagagacaactacagaagatgacaaatctgatgtg 17474053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 11449564 - 11449418
Alignment:
Q  72 cattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgact 170  Q
    ||||||||||  |||||||| |||||||||||||  ||||   ||||||| ||||| |||||||| |||||| ||||||||||||| ||||| ||  |||    
T  11449564 cattaagagtaattgagaagcttcaaatcaaggatgtttggccattgcctaatatggataatgtcattgattagacatttgaaattcctttgttgaaact 11449465  T
Q  171 ggaactatttgttcatgctctttgtctttgaagttctttgtttgttt 217  Q
    |||| |||  ||||||  |||||||| |||||||| |||||||||||    
T  11449464 ggaattatccgttcattttctttgtccttgaagttttttgtttgttt 11449418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 16405094 - 16404959
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt-tgatattgc 118  Q
    |||||||| |||||||||| ||| ||||| |||| ||  ||||||||||||||||||  ||||||| |||| ||||||||||||||  || | ||||||     
T  16405094 ttcaactccttatataggcaagggtttgaaagacatttaagaggtgccagcgcatta--agtcgttaagaattttcaaatcaaggaggttataatattgt 16404997  T
Q  119 ctgatatgaataatgtcgttgatttgacatttgaaatt 156  Q
    |||||||| ||||||| |||||||  ||||||||||||    
T  16404996 ctgatatggataatgtagttgattatacatttgaaatt 16404959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 439
Target Start/End: Original strand, 11545141 - 11545492
Alignment:
Q  72 cattaagagtcgttgagaagtttcaaatcaaggacatttgat-attgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgact 170  Q
    |||||||||||||||||||| ||||||||| |||  || |   ||| ||| ||||| |||||||| ||||||  | |||||||||| ||||| ||  |||    
T  11545141 cattaagagtcgttgagaagcttcaaatca-ggatgttaggccattacctaatatggataatgtcattgattaaaaatttgaaattcctttgttgaaact 11545239  T
Q  171 ggaactatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagt-ttgatagagaca 269  Q
    |||| |||  ||| || ||||||||| |||||||| ||||||||||| || |  | ||||||||| |||||| | || ||||| ||| ||||||||||||    
T  11545240 ggaattatccgtttattctctttgtccttgaagttttttgtttgtttctacacatggtcagaagaagacaaattgtattatcagagtcttgatagagaca 11545339  T
Q  270 gatgcacaagagaacaaatctgatgtgacttctgggtcccaaagagtcttatgttcttcagatcctggtgatcttcagagtctgacatccttcaaagtct 369  Q
        || ||||| | ||||||||||||| |||||||||||   | ||||| | |||||||||  ||| || |||| ||||||||                    
T  11545340 acaacataagaggataaatctgatgtgaattctgggtccctctgggtcttctattcttcagagtctgatggtctttagagtctg---------------- 11545423  T
Q  370 tatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
     ||| |||||||||| |||||| |||||  ||||||||||||||||| ||||||||||||||| ||||||    
T  11545424 -atgtagatcttcaggttctgattgactttctttcttctgatccaaggtgttgacttctgattaaccttt 11545492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 14475183 - 14475321
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttgatatt-gcctgatat 125  Q
    |||||||||| ||||||||||||||||| || | |  ||||| | |||||||||||||||| ||| || |||||||  ||||| ||| || |||||||||    
T  14475183 ttatataggcaaggatttgagagacgttagataagagtgccaacacattaagagtcgttgaaaagctttaaatcaaaaacattggatctttgcctgatat 14475282  T
Q  126 gaataatgtcgttgatttgacatttgaaatttctttgct 164  Q
    | ||||||||||||||| ||||||  ||||| |||||||    
T  14475283 ggataatgtcgttgattagacattcaaaattcctttgct 14475321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 11419750 - 11419862
Alignment:
Q  180 tgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagacagatgcacaag 279  Q
    ||||||| ||||||||| |||||||||||||||||||| || | || ||||||||| || ||||| || ||||| | ||||||||| |||  | || |||    
T  11419750 tgttcattctctttgtccttgaagttctttgtttgtttctacacgtggtcagaagaagaaaaactgtattatcagactttgatagaaacaactacagaag 11419849  T
Q  280 agaacaaatctga 292  Q
    || ||||||||||    
T  11419850 aggacaaatctga 11419862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 11449336 - 11449262
Alignment:
Q  365 agtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||| |||||||||| |||||| |||||  ||||||||||||| ||| ||||||||||||||| ||||||    
T  11449336 agtctaatgtagatcttcaggttctgattgactttctttcttctgatctaaggtgttgacttctgattaaccttt 11449262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 21810159 - 21810009
Alignment:
Q  68 agcgcattaagagtcgttgagaag-tttcaaatcaaggacatttgatattgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgc 166  Q
    |||||||| |||||| |||||||| |||||||| |||| |||  | | |||||||||||| ||||||| ||||||| ||||||  |||||  |||  |      
T  21810159 agcgcatttagagtctttgagaagctttcaaataaagggcatgggtttttgcctgatatggataatgttgttgattagacattcaaaattcatttattca 21810060  T
Q  167 gactggaactatttgttcatgctctttgtctttgaagttctttgtttgttt 217  Q
     ||| ||| ||| ||||||| ||||||||| |||||||| |||||||||||    
T  21810059 aactagaattatctgttcattctctttgtccttgaagttatttgtttgttt 21810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 47575581 - 47575717
Alignment:
Q  28 tttatataggctaggatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatt-tgatattgcctgata 124  Q
    ||||||||||  ||||||||||||| ||||||||   |||||| | |||||||| |||||||||   |||||||||||||| ||  |  ||| ||| |||    
T  47575581 tttatatagggaaggatttgagagaagttggagaagagtgccaacacattaagattcgttgagataattcaaatcaaggacgttgggccattccctaata 47575680  T
Q  125 tgaataatgtcgttgatttgacatttgaaatttcttt 161  Q
    || ||||||| ||||||| ||||||||||||| ||||    
T  47575681 tggataatgttgttgattagacatttgaaattccttt 47575717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 18445811 - 18445898
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggaga--ggtgccagcgcattaagagtcgttgagaagtttcaaatcaagga 105  Q
    |||| ||| ||||||||||  |||||||||||||||||||||   |||  |||||||||||||||||||||||| || ||| ||||||    
T  18445811 ttcagctccttatataggcagggatttgagagacgttggagaatagtgtaagcgcattaagagtcgttgagaagctttaaaccaagga 18445898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 21822015 - 21821935
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||| ||||| ||| ||||| |||||||||||||  |  ||||||||||||||||||  ||||||||||| |||||||||    
T  21822015 cttcagagtctaatgaagatcatcagcttctgagtagcatcctttcttctgatccaagtcgttgacttctggttgaccttt 21821935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 439
Target Start/End: Original strand, 47575798 - 47575921
Alignment:
Q  316 tcttatgttcttcagatcctggtgatcttcagagtctgacatccttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaa 415  Q
    ||||||||||||||||   ||| | |||| |||||||||    ||||| ||||| |||||||||| || |||||||||  ||   |||||||||||||||    
T  47575798 tcttatgttcttcagaatttggaggtctttagagtctgatgctcttcagagtctgatgcagatctccaacttctgagtagctttgtttcttctgatccaa 47575897  T
Q  416 gatgttgacttctgattgaccttt 439  Q
    || |||| |||||| |||||||||    
T  47575898 gacgttgtcttctggttgaccttt 47575921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 19555532 - 19555453
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||   |||||||||||||||||||| |  || || ||||| |||| ||||||||||| ||||||||||||||    
T  19555532 ttatataggcattgatttgagagacgttggagaagagtgtcatcgcataaagattcgttgagaagcttcaaatcaaggac 19555453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 4746350 - 4746279
Alignment:
Q  144 gacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgt 215  Q
    |||||||||||||  |||  ||| ||||||| ||||||||||| |  |||||| ||||||||||||||||||    
T  4746350 gacatttgaaattcttttattgcaactggaattatttgttcattccttttgtccttgaagttctttgtttgt 4746279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 4746461 - 4746426
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggt 64  Q
    |||||||||| |||||||||||||||||||||||||    
T  4746461 ttatataggcaaggatttgagagacgttggagaggt 4746426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 18446227 - 18446263
Alignment:
Q  405 ttctgatccaagatgttgacttctgattgaccttttt 441  Q
    |||| |||||||||||||||||||| |||||||||||    
T  18446227 ttctaatccaagatgttgacttctggttgaccttttt 18446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 25936443 - 25936361
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaa 102  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||||    
T  25936443 ttcagctccttatataggcaaggatttgagagacgttggagaggtgccaacgcattaagagtccttgagaagcatcaaatcaa 25936361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 31730435 - 31730497
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaag 91  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31730435 ttatataggcaaagatttgagagacgttggagaggtgtcagcgcattaagagtcgttgagaag 31730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 6999139 - 6999060
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||  ||||||||||||||||||||| |  ||||| | ||| |||||||||||||||||||||||||||||||    
T  6999139 ttatataggcagggatttgagagacgttggagaagagtgccaacacataaagagtcgttgagaagtttcaaatcaaggac 6999060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 22826016 - 22826101
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaag 103  Q
    |||| ||| |||||||||| ||||||||| ||| ||| |||| |  || |||||||||||||||||||||||||||||||||||||    
T  22826016 ttcagctccttatataggcaaggatttgaaagatgtttgagaagaatgtcagcgcattaagagtcgttgagaagtttcaaatcaag 22826101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 441
Target Start/End: Original strand, 27499989 - 27500070
Alignment:
Q  360 ttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctgatccaagatgttgacttctgattgaccttttt 441  Q
    |||||||||| ||| ||||||||| ||||||| ||| | |||||||||||||||||| ||||| |||||| |||| ||||||    
T  27499989 ttcaaagtctgatggagatcttcaacttctgaatgatttcctttcttctgatccaaggtgttggcttctggttgatcttttt 27500070  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 269
Target Start/End: Original strand, 27499738 - 27499932
Alignment:
Q  76 aagagtcgttgagaagtttcaaatcaaggacatttgata--ttgcctgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactgga 173  Q
    |||||||||||| ||||||||||||||||||| | ||||  ||  |||||||| |||||   |||| || |||| ||||||||  ||| || | |||| |    
T  27499738 aagagtcgttgaaaagtttcaaatcaaggacact-gatacattttctgatatggataatactgttggttagacaattgaaattcatttactccaactgaa 27499836  T
Q  174 actatttgttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    | |||  |||||| |||||| ||||||||||| ||||| ||||| || | || |||| ||||||||||| | |||||||  | |||||||||||||    
T  27499837 attatccgttcattctctttatctttgaagttatttgtctgtttctacacgtggtcaaaagatgacaaattgtactatctgaatttgatagagaca 27499932  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 30608473 - 30608338
Alignment:
Q  32 tataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttga-tattgcctgatatgaa 128  Q
    |||||||  |||||||||||||| |||||| |  || || |||||||||||| |||||||||||||||||||||||| || ||  ||| ||||||||| |    
T  30608473 tataggcagggatttgagagacgatggagaagagtgtcatcgcattaagagttgttgagaagtttcaaatcaaggacgttggaccatttcctgatatgga 30608374  T
Q  129 taatgtcgttgatttgacatttgaaatttctttgct 164  Q
    ||||  |||||| |   ||||||||||| |||||||    
T  30608373 taattccgttgaatattcatttgaaattcctttgct 30608338  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 24838591 - 24838503
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    |||| ||| |||||||||| | ||||||||||||||||||||||  || || ||||||||||| | | |||||| ||||||||||||||    
T  24838591 ttcagctccttatataggcaaagatttgagagacgttggagaggaatgacaacgcattaagagacatcgagaagcttcaaatcaaggac 24838503  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 37336518 - 37336709
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggt--gccagcgcattaagagtcgttgagaagtttcaaatcaaggacatttga--tattgcctgata 124  Q
    |||||||||| ||||||||||| || |||||||  |  |  ||||||||||||||| |||||||||||||||||||| ||  ||||    ||| ||||||    
T  37336518 ttatataggcaaggatttgagatacattggagaaatatgttagcgcattaagagtcattgagaagtttcaaatcaagaac-gttgaccctttgtctgata 37336616  T
Q  125 tgaataatgtcgttgatttgacatttgaaatttctttgctgcgactggaactatttgttcatgctctttgtctttgaagttctttgtttgttt 217  Q
    || ||| |     ||||| ||||||||||||| |||||| |  ||  ||| |||  |||||| ||||||||| ||||||||||||||||||||    
T  37336617 tggatagttctaatgattagacatttgaaattcctttgcagaaacatgaattatccgttcattctctttgtccttgaagttctttgtttgttt 37336709  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 26013770 - 26013851
Alignment:
Q  188 ctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagagaca 269  Q
    |||||| || |||||||||||||||||||| || |  | ||||||||| |||||| | |||||||| | |||||||||||||    
T  26013770 ctctttttccttgaagttctttgtttgtttctacacatggtcagaagaagacaaattgtactatcagattttgatagagaca 26013851  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 30608086 - 30608046
Alignment:
Q  399 cctttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  30608086 cctttcttctgatcctagatgttgacttctggttgaccttt 30608046  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 12859932 - 12859881
Alignment:
Q  120 tgatatgaataatgtcgttgatttgacatttgaaatttctttgctgcgactg 171  Q
    ||||||| |||||||||||||| |||||||||||| | ||||||||| ||||    
T  12859932 tgatatggataatgtcgttgatgtgacatttgaaaatcctttgctgcaactg 12859881  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 22826179 - 22826265
Alignment:
Q  181 gttcatgctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatactatcatagtttgatagaga 267  Q
    |||||| || |||||| ||||| || ||||||||||| || | || ||||||||| || ||||| |||||||| | |||||||||||    
T  22826179 gttcattctatttgtccttgaatttttttgtttgtttctacacgtggtcagaagaagataaactgtactatcagactttgatagaga 22826265  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 24492277 - 24492239
Alignment:
Q  401 tttcttctgatccaagatgttgacttctgattgaccttt 439  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  24492277 tttcttctgatccaagatgttgacttctggtcgaccttt 24492239  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 26013599 - 26013684
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggt--gccagcgcattaagagtcgttgagaagtttcaaatcaag 103  Q
    |||||||| || |||| || ||||||||| ||||||||||||  |  | ||||| |||||||||| |||||||| |||||||||||    
T  26013599 ttcaactccttctataagcaaggatttgaaagacgttggagaaatatgtcagcgtattaagagtcattgagaagcttcaaatcaag 26013684  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 26335463 - 26335413
Alignment:
Q  359 cttcaaagtcttatgcagatcttcagcttctgagtgactacctttcttctg 409  Q
    ||||| |||||  |||||||||||||||||||||| ||| |||||||||||    
T  26335463 cttcagagtctggtgcagatcttcagcttctgagtaacttcctttcttctg 26335413  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 19642230 - 19642169
Alignment:
Q  20 ttcaactctttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagt 81  Q
    |||||||| ||||||| || || |||| ||||||||| |||| ||| |||||||||||||||    
T  19642230 ttcaactcattatataagcaagaattttagagacgttagagaagtgtcagcgcattaagagt 19642169  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 22186068 - 22186144
Alignment:
Q  188 ctctttgtctttgaagttctttgtttgtttatatatgttgtcagaagatgacaaactatacta-tcatagtttgata 263  Q
    ||||||||||||||| | |||||||||||| |  | |||||||||||| |||||| | ||||| ||||||| |||||    
T  22186068 ctctttgtctttgaattcctttgtttgtttctgcacgttgtcagaagaagacaaattgtactattcatagtctgata 22186144  T

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Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 27767 - 27846
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 106  Q
    ||||||||||  |||||||||||||||| |||| |  ||||| || ||||||||||||||||||| ||||||||||||||    
T  27767 ttatataggcggggatttgagagacgtttgagaagagtgccaacgtattaagagtcgttgagaagcttcaaatcaaggac 27846  T

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Target: scaffold0804 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 585 - 513
Alignment:
Q  29 ttatataggctaggatttgagagacgttggagaggtgccagcgcattaagagtcgttgagaagtttcaaatcaa 102  Q
    ||||||| || ||||||| ||||||||||||||| || ||||||||||||||| ||||||||  ||||||||||    
T  585 ttatatatgcaaggattttagagacgttggagag-tgtcagcgcattaagagttgttgagaaacttcaaatcaa 513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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