View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15657_high_1 (Length: 509)

Name: NF15657_high_1
Description: NF15657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15657_high_1
NF15657_high_1
[»] chr4 (6 HSPs)
chr4 (18-502)||(9447269-9447757)
chr4 (438-500)||(9436197-9436259)
chr4 (440-502)||(9407576-9407637)
chr4 (440-502)||(9411646-9411708)
chr4 (440-502)||(9421906-9421963)
chr4 (440-473)||(9432391-9432424)
[»] chr2 (2 HSPs)
chr2 (18-319)||(29272119-29272386)
chr2 (440-502)||(29272046-29272108)
[»] chr7 (3 HSPs)
chr7 (18-306)||(2925416-2925734)
chr7 (177-306)||(2920106-2920244)
chr7 (18-112)||(2920255-2920349)
[»] chr3 (4 HSPs)
chr3 (18-100)||(31347026-31347108)
chr3 (22-100)||(31357690-31357768)
chr3 (160-306)||(31357819-31357974)
chr3 (160-306)||(31347159-31347314)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 9447757 - 9447269
Alignment:
Q  18 ccatttgttttgaagaggatgaaatgttcaagata----ctagtttcattgttatgaacaatgttgtcatcttgtgtttttggtttctctatttgatttg 113  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9447757 ccatttgttttgaagaggatgaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtgtttttggtttctctatttgatttg 9447658  T
Q  114 gattggtgaatgaattcaacacatgagagaaatcagaaacagtgactggagaataatccaacaatggaggcaatagagatgcattagtagttgatggtcc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9447657 gattggtgaatgaattcaacacatgagagaaatcagaaacagtgactggagaataatccaacaatggaggcaatagagatgcattagtatttgatggtcc 9447558  T
Q  214 ttctctagacctttcaagttttgaaccgttcattttctttccacaattacgcttctcaaagactgtagtgacaaccctttcactctacaaaaactatcat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9447557 ttctctagacctttcaagttttgaaccgttcattttctttccacaattacgcttctcaaagactctagtgacaaccctttcactctacaaaaactatcat 9447458  T
Q  314 tatatgtctgctgttgcgatgctgaactttgagatccatgcgaagggtgatcataagcaaccatacaaacatatttgggtgatctgataagattagttta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9447457 tatatgtctgctgttgcgatgctgaactttgagatccatgcgaagggtgatcatatgcaaccatacaaacatatttgggtgatctgataagattagttta 9447358  T
Q  414 aagaaacatatttggaaacatatgtataatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaataat 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9447357 aagaaacatatttggaaacatatgtataatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaataat 9447269  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 438 - 500
Target Start/End: Complemental strand, 9436259 - 9436197
Alignment:
Q  438 tataatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaata 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9436259 tataatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaata 9436197  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 9407637 - 9407576
Alignment:
Q  440 taatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaataat 502  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  9407637 taatttgtagattgtaaatatacaaatcctttacatatttcttcaaata-tacaaagaataat 9407576  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 9411708 - 9411646
Alignment:
Q  440 taatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaataat 502  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9411708 taatttgtacaatgtaaatatacaaattctttacctatttcttcaaatactacaaagaataat 9411646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 9421963 - 9421906
Alignment:
Q  440 taatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaataat 502  Q
    |||||||||||||| ||||||||||||||||||||||     |||||| ||||||||||||||    
T  9421963 taatttgtagattggaaatatacaaatcctttaccta-----tcaaatgctacaaagaataat 9421906  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 9432424 - 9432391
Alignment:
Q  440 taatttgtagattgtaaatatacaaatcctttac 473  Q
    ||||||||||||| ||||||||||||||||||||    
T  9432424 taatttgtagattataaatatacaaatcctttac 9432391  T

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Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 29272386 - 29272119
Alignment:
Q  18 ccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgtttttggtttctctatttgatttggatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272386 ccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttttggtttctctatttgatttggatt 29272287  T
Q  118 ggtgaatgaattcaacacatgagagaaatcagaaacagtgactggagaataatccaacaatggaggcaatagagatgcattagtagttgatggtccttct 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||                     || |||||||||||||||||| |||||| |||||||    
T  29272286 ggtgaatgaattcaacacatgagagaaatcagaaatagtgact--------------------tggtaatagagatgcattagtatttgatgctccttct 29272207  T
Q  218 ctagacctttcaagttttgaaccgttcattttctttccacaattacgcttctcaaagactgtagtgacaaccctttcactctacaaaaactatcattata 317  Q
    ||||||||| ||||||||||||||||||||||||              |||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  29272206 ctagaccttccaagttttgaaccgttcattttct--------------ttctcaaagactctagtgacaacccattcactctacaaaaactatcattata 29272121  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 29272108 - 29272046
Alignment:
Q  440 taatttgtagattgtaaatatacaaatcctttacctatttcttcaaatactacaaagaataat 502  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29272108 taatttgtagattgtaaatatacaaatcctttacctgtttcttcaaatactacaaagaataat 29272046  T

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Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 2925734 - 2925416
Alignment:
Q  18 ccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgtttttggtttctctatttgatttggatt 117  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  2925734 ccatttgttttgaagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttggtttctctgattgatttggatt 2925635  T
Q  118 ggtgaatgaattcaacacatgagagaaatcagaaacagtgact------------------ggagaataatccaacaatggaggcaatagaga---tgca 196  Q
    |||||||||||| ||| |||  |||||||||| || ||||| |                  |||||| | ||||| ||||||| | |||||||   ||||    
T  2925634 ggtgaatgaattgaactcatttgagaaatcaggaatagtgattttattttcactattgtagggagaaaattccaaaaatggagcccatagagatgctgca 2925535  T
Q  197 ttagtagttgatggtccttctc---------tagacctttcaagttttgaaccgttcattttctttccacaattacgcttctcaaagactgtagtgacaa 287  Q
    |||||| |||||||| ||||||         |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  2925534 ttagtatttgatggttcttctctagaggagttagaccttccaagttttgaaccattcattttctttccacaattacgcttctcaaagactctagtgacaa 2925435  T
Q  288 ccctttcactctacaaaaa 306  Q
    ||| |||||||||||||||    
T  2925434 cccattcactctacaaaaa 2925416  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 2920244 - 2920106
Alignment:
Q  177 atggaggcaatagagatgcattagtagttgatggtccttctctaga---------cctttcaagttttgaaccgttcattttctttccacaattacgctt 267  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||         |||| ||||||||||||| |||||||| |||||||||||||||||    
T  2920244 atggaggcaatagagttgcattagtatttgatggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaattacgctt 2920145  T
Q  268 ctcaaagactgtagtgacaaccctttcactctacaaaaa 306  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  2920144 ctcaaagactctagtgacaacccattcactctacaaaaa 2920106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 2920349 - 2920255
Alignment:
Q  18 ccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgtttttggtttctctatttgattt 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  2920349 ccatttgttttgaagaggatgaaatgttcaagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttgatttctctgattgattt 2920255  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 31347026 - 31347108
Alignment:
Q  18 ccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgtttttggtttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31347026 ccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc 31347108  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 31357690 - 31357768
Alignment:
Q  22 ttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgtttttggtttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31357690 ttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc 31357768  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 160 - 306
Target Start/End: Original strand, 31357819 - 31357974
Alignment:
Q  160 tggagaataatccaacaatggaggcaatagagatgcattagtagttgatggtccttctctag---------acctttcaagttttgaaccgttcattttc 250  Q
    ||||||| ||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||         ||||| || |||||||||| | | |||||    
T  31357819 tggagaagaatccaataattgaggcaatagagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccatcctttttc 31357918  T
Q  251 tttccacaattacgcttctcaaagactgtagtgacaaccctttcactctacaaaaa 306  Q
    |||||||||||   ||||||||||||| || ||| ||||| |||||||||||||||    
T  31357919 tttccacaatttttcttctcaaagactctactgagaacccattcactctacaaaaa 31357974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 306
Target Start/End: Original strand, 31347159 - 31347314
Alignment:
Q  160 tggagaataatccaacaatggaggcaatagagatgcattagtagttgatggtccttctctag---------acctttcaagttttgaaccgttcattttc 250  Q
    ||||||| ||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||         ||||| || |||||||| | | | |||||    
T  31347159 tggagaagaatccaataattgaggcaatagagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaacatcctttttc 31347258  T
Q  251 tttccacaattacgcttctcaaagactgtagtgacaaccctttcactctacaaaaa 306  Q
    ||| |||||||   ||||||||||||| || ||| ||||| |||||||||||||||    
T  31347259 tttgcacaatttttcttctcaaagactctactgagaacccattcactctacaaaaa 31347314  T

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