View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15657_high_2 (Length: 287)
Name: NF15657_high_2
Description: NF15657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15657_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 19810252 - 19809991
Alignment:
| Q |
11 |
catcatcaactacagctaaaggatgggctagacagcatggctacttaaacaggagagtcgtcaacggcttgtcgtcaaagagtccttgaataggctaatc |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19810252 |
catcatcaactacagctaaaggacgggctagacagcatggctacttaaacaggagagtcgtcaacgacttgtcgtcaaagagtccttgaataggctaatc |
19810153 |
T |
|
| Q |
111 |
ctaatgtgtatccaaggtcaagggctgtaggaacagcaaccacatttccaacttgcatgtacctctgtttgatagtgctgcaaagtttataacaatctgg |
210 |
Q |
| |
|
||||||||| ||| ||||||||||| | ||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19810152 |
ctaatgtgtgtccgaggtcaagggccattggaacagtaaccgcatttccaacttacatgtacctctgtttgatagggctgcaaagtttataacaatctgg |
19810053 |
T |
|
| Q |
211 |
aaatccttgcagccttacattctctcgaacgctatgaactctgtcttcttttgggttgagaa |
272 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||| ||||| |
|
|
| T |
19810052 |
aaatccttgtagccttacattctctcggaggctatgaactctgccttcttttgggtcgagaa |
19809991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 9389215 - 9389377
Alignment:
| Q |
11 |
catcatcaactacagctaaaggatgggctagacagcatggctacttaaacaggagagtcgtcaacggcttgtcgtcaaagagtccttgaataggctaatc |
110 |
Q |
| |
|
|||||||||||||| |||||| | |||| ||||| | ||| |||||||| ||||||| ||||| || |||| ||| |||||||| |||| | |||| | |
|
|
| T |
9389215 |
catcatcaactacatctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattg-ctaaac |
9389313 |
T |
|
| Q |
111 |
ctaatgtgtatccaaggtcaagggctgtaggaacagcaaccacatttccaacttgcatgtacct |
174 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
9389314 |
ctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacct |
9389377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 9389878 - 9389965
Alignment:
| Q |
170 |
tacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtctt |
257 |
Q |
| |
|
||||||||||||| || || ||||| ||||| || |||||||||||||| |||||| |||||||||||| ||| |||||||||||| |
|
|
| T |
9389878 |
tacctctgtttgacagggccacaaagcttatagcagtctggaaatccttgtagccttgcattctctcgaatactaagaactctgtctt |
9389965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 31938862 - 31939024
Alignment:
| Q |
11 |
catcatcaactacagctaaaggatgggctagacagcatggctacttaaacaggagagtcgtcaacggcttgtcgtcaaagagtccttgaataggctaatc |
110 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| | ||| |||||||| ||||| | ||||| || |||| ||| |||||||| |||| ||||| | |
|
|
| T |
31938862 |
catcatcaactacatctaaagaatgggctagacaacttgggtacttaaaggggagaattgtcaaaggactgtcatcagagagtcctagaat-tgctaaac |
31938960 |
T |
|
| Q |
111 |
ctaatgtgtatccaaggtcaagggctgtaggaacagcaaccacatttccaacttgcatgtacct |
174 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||| | ||||||||||| || ||||| |
|
|
| T |
31938961 |
ctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgaatatacct |
31939024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 13535500 - 13535653
Alignment:
| Q |
11 |
catcatcaactacagctaaaggatgggctagacagcatggctacttaaacaggagagtcgtcaacggcttgtcgtcaaagagtccttgaataggctaatc |
110 |
Q |
| |
|
||||||||||| | |||||| | |||| ||||| | ||| |||||||| ||||||| ||||| |||||||| ||| | |||||| |||||| | || | |
|
|
| T |
13535500 |
catcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatcagaaagtcctagaatagccaaa-c |
13535598 |
T |
|
| Q |
111 |
ctaatgtgtatccaaggtcaagggctgtaggaacagcaaccacatttccaacttg |
165 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
13535599 |
ctaatgtgtatccaagggcaagggctaccggaacagcgaccgcatttccaacttg |
13535653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 31939505 - 31939592
Alignment:
| Q |
170 |
tacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtctt |
257 |
Q |
| |
|
||||||||||||| || || ||||| ||||| || |||||||||||||| |||||| |||||||||| | ||| |||||||||||| |
|
|
| T |
31939505 |
tacctctgtttgacagggccacaaagcttatagcagtctggaaatccttgtagccttgcattctctcgtatactaagaactctgtctt |
31939592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 5639122 - 5639284
Alignment:
| Q |
11 |
catcatcaactacagctaaaggatgggctagacagcatggctacttaaacaggagagtcgtcaacggcttgtcgtcaaagagtccttgaataggctaatc |
110 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| | ||| |||||||| ||||||| ||||| || ||||| || || ||||||||| ||||| | |
|
|
| T |
5639122 |
catcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaa-gtgctaaac |
5639220 |
T |
|
| Q |
111 |
ctaatgtgtatccaaggtcaagggctgtaggaacagcaaccacatttccaacttgcatgtacct |
174 |
Q |
| |
|
| ||||||||||| ||| |||| | ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
5639221 |
ccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacct |
5639284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 5639592 - 5639658
Alignment:
| Q |
191 |
caaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtctt |
257 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||| |||||||||||| | || | |||||||||| |
|
|
| T |
5639592 |
caaagtttatagcaatcaggaaatccctgaagccttgcattctctcgaatggtaagtactctgtctt |
5639658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 1337692 - 1337779
Alignment:
| Q |
170 |
tacctctgtttgatagtgctgcaaagtttataacaatctggaaatccttgcagccttacattctctcgaacgctatgaactctgtctt |
257 |
Q |
| |
|
||||||||||||| || || ||||| ||||| || |||||||||||||| |||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
1337692 |
tacctctgtttgacagggccacaaagcttatagcagtctggaaatccttgtagccttgcattctctcgaatgctaagaactctgtctt |
1337779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 1337031 - 1337193
Alignment:
| Q |
11 |
catcatcaactacagctaaaggatgggctagacagcatggctacttaaacaggagagtcgtcaacggcttgtcgtcaaagagtccttgaataggctaatc |
110 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||| | || |||||||| ||||||| ||||| || ||| || || ||||| |||| | | || | |
|
|
| T |
1337031 |
catcattaactacatctaaaggacgggctagacaactagggtacttaaaggggagagttgtcaaaggaccgtcatcggagtgtcctagaattgccaaa-c |
1337129 |
T |
|
| Q |
111 |
ctaatgtgtatccaaggtcaagggctgtaggaacagcaaccacatttccaacttgcatgtacct |
174 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
1337130 |
ctaatgtgtatccaagggcaagggcaacaggaacagcaactgcgtttccaacttgcatgtacct |
1337193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University