View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15657_low_2 (Length: 466)
Name: NF15657_low_2
Description: NF15657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15657_low_2 |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 166 - 450
Target Start/End: Original strand, 6383805 - 6384089
Alignment:
| Q |
166 |
atcatatgatgtttttcagtatgtaatcaagtctttttcttgtcgtttagggagtttctagtagttttatagtgagttactcatggtttgagaaagtgta |
265 |
Q |
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| T |
6383805 |
atcatatgatgtttttcagtatgtaatcaagtctttttcttgtcgtttaaggagtttctagtagttttatagtgagttactcatggtttgagaaagtgta |
6383904 |
T |
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| Q |
266 |
acattttgttttgagttgttgtaattctcattcttccctaactaggaaactctagaagcatattgagcctttttgggtgtataaatgattgaagtaagtc |
365 |
Q |
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| T |
6383905 |
acattttgttttgagttgttgtaattctcattcttccctaactaggaaactctagaagcatattgagcctttttgggtgtataaatgattgaagtaagtc |
6384004 |
T |
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| Q |
366 |
aaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggagaaatttt |
450 |
Q |
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| T |
6384005 |
aaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttggagaaatttt |
6384089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 6383585 - 6383735
Alignment:
| Q |
17 |
ataggggattcgagtgtggatgaaaccatggattatcttcttcaaatatttcaattccttgaaaatggaagttgcaagttagtcggaagtgggacaaaat |
116 |
Q |
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| T |
6383585 |
ataggggattcgagtgtggatgaaaccatggattatcttcttcaaatatttcaattccttgaaaatggaagttacaagttagtcggaagtgggacaaaat |
6383684 |
T |
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| Q |
117 |
gaagatctgaacaccttgtcgaaaaggtatgttatttccttggttgaaaat |
167 |
Q |
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| T |
6383685 |
gaagatctgaacaccttgtcgaaaaggtatgttatttccttggttgaaaat |
6383735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 1157 - 1196
Alignment:
| Q |
268 |
attttgttttgagttgttgtaattctcattcttccctaac |
307 |
Q |
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| T |
1157 |
attttgttttgagttattgtaattctctttcttccctaac |
1196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 441
Target Start/End: Original strand, 1228 - 1324
Alignment:
| Q |
344 |
gtataaatgattgaagtaagtcaaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaagcatataaagaccaaataacttgg |
441 |
Q |
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| T |
1228 |
gtataaatcatgaaagtaagtcaaccaagatatctcttgaaagttatggaagccagaagatcaa-tacaatgaaacatatgaagaccaaataacttgg |
1324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 33148704 - 33148757
Alignment:
| Q |
365 |
caaccaagtcatcttatggaagttatggaagttaaaagaccaagtacaacgaag |
418 |
Q |
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| T |
33148704 |
caaccaagtcatctcatgcaagttatggaagttagatgatcaagtacaatgaag |
33148757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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