View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15657_low_6 (Length: 204)
Name: NF15657_low_6
Description: NF15657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15657_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 41520669 - 41520836
Alignment:
| Q |
18 |
atgaaatcatatggttgtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaagagaaagggct |
117 |
Q |
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| T |
41520669 |
atgaaatcatatggttgtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaagagaaagggct |
41520768 |
T |
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| Q |
118 |
aatgaacttagtgagattgcnnnnnnngctgttgaaaaagaaggatcttcttatcttaatatcacttt |
185 |
Q |
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| T |
41520769 |
aatgaacttagtgagattgcaaaaaaagctgttgaaaaaggtggatcttcttatcttaatatcacttt |
41520836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 41511640 - 41511796
Alignment:
| Q |
29 |
tggttgtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaagagaaagggctaatgaacttag |
128 |
Q |
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| T |
41511640 |
tggttgtgaagaaggaagttattaaagaggcaatatgcaatgtgatgaatgaggaagttgaagagagtaaagagagaagagaaagggctaatgaacttag |
41511739 |
T |
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| Q |
129 |
tgagattgcnnnnnnngctgttgaaaaagaaggatcttcttatcttaatatcacttt |
185 |
Q |
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| T |
41511740 |
tgagattgcaaaaaaagctgttgaaaaaggtggatcttcttatcttaatatcacttt |
41511796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 48532987 - 48533129
Alignment:
| Q |
34 |
gtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaagagaaagggctaatgaacttagtgaga |
133 |
Q |
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| T |
48532987 |
gtgaagaaggaaggtattaaagaggcaatatgcatggtgatggatgagggag---aagaaagtaaagagagaagagaaagggctagtaaactaagtgaga |
48533083 |
T |
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| Q |
134 |
ttgcnnnnnnngctgttgaaaaagaaggatcttcttatcttaatat |
179 |
Q |
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| T |
48533084 |
tggcaaaaagagctgttgaaaaaggtggatcctctcatcttaatat |
48533129 |
T |
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