View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_14 (Length: 349)
Name: NF15658_high_14
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 34646874 - 34647207
Alignment:
| Q |
1 |
cgaaccgagtaggtaagttcacttctaatgagttctaagagttatgtgaataa--gggaatcaaatgtccattaattacaattctaaggttcctttaata |
98 |
Q |
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| T |
34646874 |
cgaatcgagtaggtaagttcacttctaatgagttctaagagttatgtgaataaaagggaatcaaatgtccattaattacaattctaaggttcctttaata |
34646973 |
T |
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| Q |
99 |
aaatgacgccgtggaaagaaaaaataaataattcaaagtaagatcaaaagtaagaacccaataaagaattttggactgaagttgtgacgtgtgttgtcta |
198 |
Q |
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| T |
34646974 |
aaatgatgccgtggaaagaaaaaataaataattcaaagtaagatcaaaagtaagaacccaataaagaattttggactgaagttgtgacgtgtgttgtcta |
34647073 |
T |
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| Q |
199 |
tttatctaatagatttctaacaagatgtgtgtgttggaaaatacaccacaataagcatggagtggaagaaacatctagagaagttcaacaagggctcctt |
298 |
Q |
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| T |
34647074 |
tttatctaatagatttctaacaagatgtgtgtgttggaaaatacaccacaataagcatggagtggaagaaacatctagagaagttcaacaagggctcctt |
34647173 |
T |
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| Q |
299 |
caatcgcattaaggaagacaccttcaatcgcaat |
332 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34647174 |
caatcgcattaaggaagacaccttcaatcgcaat |
34647207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 32973451 - 32973519
Alignment:
| Q |
161 |
aaagaattttggactgaagttgtgacgtgtgttgtctatttatctaatagatttctaacaagatgtgtg |
229 |
Q |
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|||||||||||| |||||||||||| |||| |||||| |||||||||||| || ||||||| ||||| |
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| T |
32973451 |
aaagaattttgggttgaagttgtgacatgtgcagtctatctatctaatagatctccaacaagaagtgtg |
32973519 |
T |
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