View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_15 (Length: 336)
Name: NF15658_high_15
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 34376260 - 34375941
Alignment:
| Q |
1 |
tccatatgtgaatcaattttggcaactgctgcaatgtcaaattttttaattgataatgtgtgttgacatccccttttcttgtaccttttcctcctcctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376260 |
tccatatgtgaatcaattttggcaactgctgcaatgtcaaattttttaattgataatgtgtgttgacatccccttttcttgtaccttttcctcctcctga |
34376161 |
T |
|
| Q |
101 |
ttcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaagatatggcagttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376160 |
ttcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaagatatggcagttca |
34376061 |
T |
|
| Q |
201 |
tgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtgatgccacctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376060 |
tgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtgatgccacctgtg |
34375961 |
T |
|
| Q |
301 |
aaacatgcatttatgtattt |
320 |
Q |
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|||||||||||||||||||| |
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| T |
34375960 |
aaacatgcatttatgtattt |
34375941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 34288574 - 34288685
Alignment:
| Q |
195 |
agttcatgacattctttgatacttattttt-gagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtgatgcc |
293 |
Q |
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|||| |||| ||||||||||| |||||||| ||||||| || |||||||| || ||||| ||||||| ||||||||| | |||||||||||||| |
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| T |
34288574 |
agtttatgaaattctttgatatttattttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatccttgtgatgcc |
34288673 |
T |
|
| Q |
294 |
acctgtgaaaca |
305 |
Q |
| |
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|||||| ||||| |
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| T |
34288674 |
acctgtaaaaca |
34288685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 34562939 - 34563017
Alignment:
| Q |
91 |
ctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtat |
169 |
Q |
| |
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||||| ||||| ||| ||||||||| | ||||||||| | || |||| |||||||| |||||||||||| |||||||| |
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| T |
34562939 |
ctcctactgatccaaacacctcaaccaatgaatcacagtcacttgcattgagttccctcacatgttgaagtatttgtat |
34563017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 15892049 - 15892147
Alignment:
| Q |
89 |
tcctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaag |
187 |
Q |
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||||||||||||| ||| ||||||| |||||||||||||| || | | || ||||||| ||||| ||||||||||||||| | |||||| || ||||| |
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| T |
15892049 |
tcctcctcctgatccaaacacctcatttagtgaatcacaattacttacggtcagttccttcacattttgaagcatttgtatctcattgtacggcacaag |
15892147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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