View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_18 (Length: 309)
Name: NF15658_high_18
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_18 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 33865743 - 33866046
Alignment:
| Q |
6 |
atgaacccaaggtcgccaagctgtttaggctgagatannnnnnnccatccaacaagatgaatacctttgttattattatccctctaaatgaaattgcagg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33865743 |
atgaacccaaggtcgccaagctgtttaggctgagatattttttcccatccaacaagatgaatacctttgttattattatccctctaaatgaaattgcggg |
33865842 |
T |
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| Q |
106 |
tggaggaaagtagagaagatgctagagtcaccctgcttggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttcaataataaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33865843 |
tggaggaaagtagagaagatgctagagtcaccctgcttggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttcaataataaa |
33865942 |
T |
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| Q |
206 |
ctgaaaatcactacgtttagctcttcctttaagaatagaaaagctcagatatttgtcaagagagttggtgcttctgataccagagatggaagtaagaata |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
33865943 |
ctgaaaatcactacgtttagctcttcctttaagaatagaaaagcctagatatttgtcaagagagttggtgcttttgacaccagagatggaagtaagaata |
33866042 |
T |
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| Q |
306 |
ttta |
309 |
Q |
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|||| |
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| T |
33866043 |
ttta |
33866046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 12645590 - 12645712
Alignment:
| Q |
164 |
tttccaagaagcaagcctggattgcattttttcaataataaactgaaaatcactacgtttagctcttcctttaagaatagaaaagctcagatatttgtca |
263 |
Q |
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| T |
12645590 |
tttccaagaagcaagacttgattgcattttgtcaatgataaaaaggaaatcacttctttttgctctccatttaaggataggaaagcccaaatatttatcc |
12645689 |
T |
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| Q |
264 |
agagagttggtgcttctgatacc |
286 |
Q |
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| T |
12645690 |
agagaggtcgtgcttctaatacc |
12645712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 18091840 - 18092042
Alignment:
| Q |
106 |
tggaggaaagtagagaagatgctagagtcaccctgcttggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttc-aataataa |
204 |
Q |
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||||||| || | ||||||||| |||||||| || | || ||||||| || |||||| |||||| |||| || || |||| |||||| |||||||| |
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| T |
18091840 |
tggaggagagaacagaagatgcaagagtcactcttcctgtcttatttagcatcttatgcttccaaaaagccagtatgcattgttttttttttaataataa |
18091939 |
T |
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| Q |
205 |
actgaaaatcactacgtttagctcttcctttaagaatagaaaagctcagatatttgtcaagagagttggtgcttctgataccagagatggaagtaagaat |
304 |
Q |
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| T |
18091940 |
aatggaaataacttcgtttagcccttcccttgagaataagaaagccaagatatttgtcaagagagtcgatgcttttaataccataaatggaagtgagact |
18092039 |
T |
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| Q |
305 |
att |
307 |
Q |
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||| |
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| T |
18092040 |
att |
18092042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 301
Target Start/End: Original strand, 32874012 - 32874206
Alignment:
| Q |
106 |
tggaggaaagtagagaagatgctagagtcaccctgcttggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttcaataataaa |
205 |
Q |
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|||||||||| | | | |||||||||||||| || | ||||||||| |||||| ||||||| ||||||||||| ||||||||||||| ||||| ||||| |
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| T |
32874012 |
tggaggaaagaacatatgatgctagagtcactctacctggtttattcaacaacctatgttttcaagaagcaagtatggattgcattttctcaatgataaa |
32874111 |
T |
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| Q |
206 |
ctgaaaatcactacgtttagctcttcctttaagaatagaaaagctcagatatttgtcaagagagttggtgcttctgataccagagatggaagtaag |
301 |
Q |
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|||| |||||||| ||||| |||||||| ||||||| |||| || ||||||||||| |||| | ||||||||||| |||| |||||||||||| |
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| T |
32874112 |
aagaaagtcactacgcttagcccttccttttagaatagggaagc-cacatatttgtcaaaagaggtagtgcttctgatgccagtgatggaagtaag |
32874206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 27153840 - 27153644
Alignment:
| Q |
106 |
tggaggaaagtagagaagatgctagagtcaccctgcttggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttcaataataaa |
205 |
Q |
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|||||||||| | ||||||||| ||||||| || | |||||||||||||||| | || |||||||| ||| | |||||||||| ||||||||||||||| |
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| T |
27153840 |
tggaggaaagaacagaagatgcaagagtcatacttcctggtttatttaacaacctgtgcttccaagaggcaggtctggattgcaatttttcaataataaa |
27153741 |
T |
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| Q |
206 |
ctgaaaatcactacgtttagctcttcctttaagaatagaaaagctcagatatttgtcaagagagttggtgcttctgataccagagatggaagtaaga |
302 |
Q |
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| T |
27153740 |
atggaagtcattgcgcttagctctcccctttagaatgggaaaggccaaatatttatccagagatgatgtgcttctaataccatagatggaagtaaga |
27153644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 27781222 - 27781373
Alignment:
| Q |
144 |
ggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttcaataataaactgaaaatcactacgtttagctcttcctttaagaatag |
243 |
Q |
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|||||||||||||| || | |||||| ||||||| | | |||||||| ||||||| ||| ||||| ||||| ||||||| || ||||| || || | |
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| T |
27781222 |
ggtttatttaacaatttgttcttccaataagcaagacgagtatgcattttgtcaataacaaaatgaaagtcacttcgtttaggtcggcctttgagtattg |
27781321 |
T |
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| Q |
244 |
aaaagctcagatatttgtcaagagagttggtgcttctgataccagagatgga |
295 |
Q |
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||| | || ||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
27781322 |
gaaaacccaaatatttgtcaagagatgtggtgcttcagataccaaagatgga |
27781373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 24181340 - 24181386
Alignment:
| Q |
60 |
agatgaatacctttgttattattatccctctaaatgaaattgcaggt |
106 |
Q |
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||||||| || ||||||||||||||| ||| |||||||||||||||| |
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| T |
24181340 |
agatgaacacatttgttattattatctctccaaatgaaattgcaggt |
24181386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 24132834 - 24132991
Alignment:
| Q |
144 |
ggtttatttaacaacttatgtttccaagaagcaagcctggattgcattttttcaataataaactgaaaatcactacgtttagctcttcctttaagaatag |
243 |
Q |
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||||| ||||||||| | | ||||||||| || | ||| | ||||||||||||||||||||| | |||||||| | || |||||||||||||| || | |
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| T |
24132834 |
ggtttgtttaacaacctgtttttccaagatgctaaccttgtttgcattttttcaataataaaaagcaaatcacttctctttgctcttcctttaaggatgg |
24132933 |
T |
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| Q |
244 |
aaaagctcagatatttgtcaagagagttggtgcttctgataccagagatggaagtaag |
301 |
Q |
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||| | | |||||| |||||||| |||| ||||| || ||||| || |||||||| |
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| T |
24132934 |
gaaaaccaatatatttatcaagagatgtggtacttcttatgccagaaatagaagtaag |
24132991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 46784078 - 46784137
Alignment:
| Q |
158 |
cttatgtttccaagaagcaagcctggattgcattttttcaataataaactgaaaatcact |
217 |
Q |
| |
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||||| ||||||||||||||| || | ||||||||| ||||||||||| | ||||||||| |
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| T |
46784078 |
cttatatttccaagaagcaagtctcgtttgcattttctcaataataaaattaaaatcact |
46784137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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