View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15658_high_20 (Length: 278)
Name: NF15658_high_20
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_20 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 51458418 - 51458674
Alignment:
| Q |
1 |
tggggaggcggttgatatgtttcaccaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51458418 |
tggggaggcggttgatatgtttcaccaactctctgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatattttt |
51458517 |
T |
|
| Q |
101 |
cggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51458518 |
cggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggctt |
51458617 |
T |
|
| Q |
201 |
agacaattttccattatctagttatagggatgcccctcatgaccatttactttctct |
257 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||| |||||| |
|
|
| T |
51458618 |
agacaattttccattatctagctctatggatgcccctcatgaccatttaccttctct |
51458674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 30204186 - 30204068
Alignment:
| Q |
72 |
ccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattg |
171 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| |||| |
|
|
| T |
30204186 |
ccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattg |
30204087 |
T |
|
| Q |
172 |
cattcctttaaagcaggta |
190 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
30204086 |
ctctcctttaaagcaggta |
30204068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 51483059 - 51483175
Alignment:
| Q |
74 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
173 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||| ||||||||| |||||| ||||| |
|
|
| T |
51483059 |
ttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgct |
51483158 |
T |
|
| Q |
174 |
ttcctttaaagcaggta |
190 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51483159 |
ctcctttaaagcaggta |
51483175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 51499896 - 51500012
Alignment:
| Q |
74 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
173 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | | |
|
|
| T |
51499896 |
ttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcct |
51499995 |
T |
|
| Q |
174 |
ttcctttaaagcaggta |
190 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51499996 |
ctcctttaaagcaggta |
51500012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 35 - 260
Target Start/End: Original strand, 43162722 - 43162947
Alignment:
| Q |
35 |
gacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatc |
134 |
Q |
| |
|
|||||||||||| |||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43162722 |
gacactaatgatagtgacttggtggttggaggggaccccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatata |
43162821 |
T |
|
| Q |
135 |
tagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagttatagggatgcc |
234 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
43162822 |
taaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcagcttagacaattttccattatctagctctatggatgcc |
43162921 |
T |
|
| Q |
235 |
cctcatgaccatttactttctctgct |
260 |
Q |
| |
|
|||| ||| ||||||||||||||||| |
|
|
| T |
43162922 |
cctcgtgatcatttactttctctgct |
43162947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 27398527 - 27398647
Alignment:
| Q |
70 |
tcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaat |
169 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||| || |
|
|
| T |
27398527 |
tcccttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccat |
27398626 |
T |
|
| Q |
170 |
tgcattcctttaaagcaggta |
190 |
Q |
| |
|
||| ||||||| || ||||| |
|
|
| T |
27398627 |
tgctctcctttagaggaggta |
27398647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 20866876 - 20866760
Alignment:
| Q |
74 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
173 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||| ||| || |||| |
|
|
| T |
20866876 |
ttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgtt |
20866777 |
T |
|
| Q |
174 |
ttcctttaaagcaggta |
190 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20866776 |
ctcctttaaagcaggta |
20866760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 135620 - 135504
Alignment:
| Q |
74 |
ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca |
173 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||| |
|
|
| T |
135620 |
ttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgct |
135521 |
T |
|
| Q |
174 |
ttcctttaaagcaggta |
190 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
135520 |
ctcctttaaagcaggta |
135504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University