View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_26 (Length: 237)
Name: NF15658_high_26
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_26 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 19265268 - 19265434
Alignment:
| Q |
3 |
tcaaacacattaaaaaatagtagaaataatatcattataactatcatacctataaaaatcaccaagaaattatagtatattattttaagctaaaatagta |
102 |
Q |
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| T |
19265268 |
tcaaacacattaaaaattagtagaaataatttcattataactatcatacctataaaagtcaccaagaaattatagtttattattttaagctaaaatagta |
19265367 |
T |
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| Q |
103 |
tcgattcattggtgcacatgaatacaggcacaatcccttaaaagaatatacagacagcttataaact |
169 |
Q |
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| T |
19265368 |
atgattcattggtgcacataaatacacgcacaatcccttaaaagaatatacagacagcttataaact |
19265434 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 19265454 - 19265500
Alignment:
| Q |
180 |
aatttgcaaataactat----atagtcaacacattcacaaataaatt |
222 |
Q |
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| T |
19265454 |
aatttgcaaataactatcaatatagtcaacacattcacaaataaatt |
19265500 |
T |
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Target: scaffold0028 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 88388 - 88466
Alignment:
| Q |
12 |
ttaaaaaatagtagaaataatatcattataactatcatacctataaaaatcaccaagaaattatagtatattattttaa |
90 |
Q |
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| T |
88388 |
ttaaataatagtacaaataaattcaatataactatcatacctataaaaatcaccataaaattgtagtatattattttaa |
88466 |
T |
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Target: scaffold0009 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 159814 - 159892
Alignment:
| Q |
12 |
ttaaaaaatagtagaaataatatcattataactatcatacctataaaaatcaccaagaaattatagtatattattttaa |
90 |
Q |
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| T |
159814 |
ttaaataatagtacaaataaattcaatataactatcatacctataaaaatcaccataaaattgtagtatattattttaa |
159892 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 22386042 - 22386085
Alignment:
| Q |
7 |
acacattaaaaaatagtagaaataatatcattataactatcata |
50 |
Q |
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| T |
22386042 |
acacatttaaaaatagtagaaataatttcattatgactatcata |
22386085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16198031 - 16198089
Alignment:
| Q |
1 |
tttcaaacacattaaaaaatagtagaaataatatcattataactatcatacctataaaa |
59 |
Q |
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| T |
16198031 |
tttcaaacacatttaaaaatagtataaataattccattatgactatcatatttataaaa |
16198089 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13436436 - 13436494
Alignment:
| Q |
1 |
tttcaaacacattaaaaaatagtagaaataatatcattataactatcatacctataaaa |
59 |
Q |
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| T |
13436436 |
tttcaaacacatttaaaaatagtataaataattccattatgactatcatatttataaaa |
13436494 |
T |
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