View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_4 (Length: 636)
Name: NF15658_high_4
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 20 - 627
Target Start/End: Original strand, 42902529 - 42903136
Alignment:
| Q |
20 |
ccataacatgttatcataatctgttaccattcctttattttagtctcttagtaagttaattacatatagtttttggttggatagtatccaaattccatct |
119 |
Q |
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| T |
42902529 |
ccataacatgttatcataatctgttaccattcctttattttagtctcctagtaagttaattacatatagtttttggttggatagtatccaaattccatct |
42902628 |
T |
|
| Q |
120 |
ctcattttctcctatatctcatgccatgtttctcagacagttcaatatatggtgaaatcatagcatgatccataggaaagcaattcgatgtcatgatcat |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42902629 |
ctcattttctcctatatctcattccatgtttctcagacagttcaatatatggtgaaatcatagcatgatccataggaaagcaattcaatgtcatgatcat |
42902728 |
T |
|
| Q |
220 |
ctagaaagtgtatgaattacctctcgctaccctggtttctcaaacgtttcagcacatcttcttcgccaatgagtcgtctgaccaaacctttaaatcgacc |
319 |
Q |
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| T |
42902729 |
ctagaaagtgtatgaattacctctcgctaccctggtttctcaaacgtttcagcacatcttcttcgccaatgagtcgtctgaccaaacctttaaattgacc |
42902828 |
T |
|
| Q |
320 |
aaaaattcaattcagactgaatcatgatcatagatatagtgatcagtgataatatacaaacacttatgcatgctacataactctttacatagataggaca |
419 |
Q |
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| T |
42902829 |
aaaaattcaattcagactgaatcatgatcatagatatagtgatcagtgataatatacaaacacttatggatgctacataactctttacatagataggaca |
42902928 |
T |
|
| Q |
420 |
tatgtaacatgagattcattctttaaataacttattaccattggtataatcgcggcaatcgttaacaccgattctcaaatctgtttcccattttttgttg |
519 |
Q |
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| T |
42902929 |
tatgtaacatgagattcattctttaaataacttattaccattggtataatcgcggcaatcgttgacaccgattctcaaatctgtttcccattttttgttg |
42903028 |
T |
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| Q |
520 |
aattcacttgctatttccatagcatctgcttctgcagatccaactagccaacatttgcttcgcggcaatctttttaacttcctcacaagaacagctcctg |
619 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903029 |
aattcacttgctatttccacagcatctgcttctgcatatccaactagccaacatttgcttcgcggcaatctttttaacttcctcacaagaacagctcctg |
42903128 |
T |
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| Q |
620 |
agaattat |
627 |
Q |
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|||||||| |
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| T |
42903129 |
agaattat |
42903136 |
T |
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