View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_7 (Length: 455)
Name: NF15658_high_7
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 6527933 - 6528201
Alignment:
| Q |
23 |
atcatcccccttagcaccaatctgcatcctaccttgtccatgtgaccccctccccgcccgaaaatgaatcccattcctaaacggtaacaacgaattcatc |
122 |
Q |
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| T |
6527933 |
atcatcccccttagcaccaatctgcatcctaccttgtccatgtgaccccctccccgcccgaaaatgaatcccattcctaaacggtaacaacgaattcatc |
6528032 |
T |
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| Q |
123 |
gctttatcaacttccacatacacatttccacctctccctccatcccctcctgatggacctccaaacggtacgtatttctcccgcctgaatgccatacttc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6528033 |
gctttatcaacttccacatacacatttccacctctccctccatcccctcctgatggccctccaaacggtacgtatttctcccgcctgaatgccatacttc |
6528132 |
T |
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| Q |
223 |
cgttccctccgtctcctgccttcgcgaagtttttcgcccggaaaaaaccccgcatcaccgccggtaatc |
291 |
Q |
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| T |
6528133 |
cgttccctccgtctcctgccttcgcgaagattttcgcccggtcaaaacaccgcatcaccgccggtaatc |
6528201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 6528267 - 6528334
Alignment:
| Q |
357 |
tccataaacccgaattcttcattatcttcagacaaagactcaccaattccttcaaaatcaccattgat |
424 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6528267 |
tccataaactccaattcttcattatcttcagacaaagactcaccaattccttcaaaatcaccattgat |
6528334 |
T |
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