View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_high_8 (Length: 435)
Name: NF15658_high_8
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 38890680 - 38891088
Alignment:
| Q |
10 |
tctttatcaactgagatagtatggaaaaggaagaccaataataaacacgaatatttaaacgacaattgtgactcacatg-------aaagtttgtctgat |
102 |
Q |
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| T |
38890680 |
tctttaccaactgagatatcatggaaaaggaagaccaataataaacacgagtatttaaacgacaattgtgactcacatctttttttaaagtttgtttgat |
38890779 |
T |
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| Q |
103 |
gcgtgatttacaatatgaatacaagtgcaatgtcaagctttgttgtgaattttggaatacatgaattagaatcaatagttaattttggtttgtgggaaat |
202 |
Q |
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| T |
38890780 |
gcatgatttacaatatgaatacaagtgcaatgtcaagctttgttgtgaattttggaatacatgaattagaatcaatagttaattttggtttgtgggaaat |
38890879 |
T |
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| Q |
203 |
acatgataatggtgtgctgatacatccacgattgcacaggttgtttattagtagtacccgaacatcggttgacattaattttaggtgtgttgtagattaa |
302 |
Q |
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| T |
38890880 |
acatgataatggtgtgctgatacatccacgattgcacaggttgtttat---tagtacccgaacatcggttgacattaattttaggtgtgttgtagattaa |
38890976 |
T |
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| Q |
303 |
aaatttcatgagaaaaccaacatggatttcgcatcatgtttttcaatttgatttcaaacatgtataaaattttggagtgatttaatttcagcaaagtata |
402 |
Q |
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| T |
38890977 |
aaatttcatgagaaaaccaacatggatttcgcatcatgtttttcaatttgatttcaaacatgtataaaattttggagtgatttaatttcaacaaagtata |
38891076 |
T |
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| Q |
403 |
ctatttatgatg |
414 |
Q |
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| T |
38891077 |
ctatttatgatg |
38891088 |
T |
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