View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15658_high_9 (Length: 417)

Name: NF15658_high_9
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15658_high_9
NF15658_high_9
[»] chr4 (2 HSPs)
chr4 (11-417)||(5900475-5900876)
chr4 (19-237)||(5861636-5861854)
[»] chr3 (1 HSPs)
chr3 (271-299)||(27277782-27277810)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 5900475 - 5900876
Alignment:
Q  11 aatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaatactacatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5900475 aatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaatgctacatt 5900574  T
Q  111 attgcaagaattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatcacaattctc 210  Q
    ||||||||||||||||||||||||     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5900575 attgcaagaattaatctgcaatca-----tcaaccttgaatgacgacacaatagattgcaattctcaacaatatcaaccactcattggatcacaattctc 5900669  T
Q  211 cgcaatatcaagaaccataacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacactcctcggattagacgtgccccaggt 310  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5900670 cgcaatatcaagaaccacaacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacacacctcggattagacgtgtcccaggt 5900769  T
Q  311 tcagacatgtgtttgtgtttgtgtcgtgtccatattcgtgcttcatatgtgtataataattaaccagccctaacaaaaacataactaacataaccttatc 410  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5900770 tcagacatgtgtttgtgtctgtgtcgtgtccgtattcgtgattcatatgtgtataataattaaccagccctaacaaaaacataactaacatcaccttatc 5900869  T
Q  411 aagtaaa 417  Q
    |||||||    
T  5900870 aagtaaa 5900876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 5861636 - 5861854
Alignment:
Q  19 aataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaatactacattattgcaag 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||| || ||||||    
T  5861636 aataagaacatattcacacatgattttgttctttttcagtgttattaaaatatcttgtatctttaattgattgcatctataaaaactacaatagtgcaag 5861735  T
Q  119 aattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatcacaattctccgcaatat 218  Q
    |||||||||||||||||||||| | |||||||| || ||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  5861736 aattaatctgcaatcacaatattagccttgaataacgacacaatcgattgcaattctccacaatatcaaccactcattagagcacaattctccgcaatat 5861835  T
Q  219 caagaaccataacacgacc 237  Q
    |||||| || | |||||||    
T  5861836 caagaatcaaagcacgacc 5861854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 27277782 - 27277810
Alignment:
Q  271 atgaagcacatacactcctcggattagac 299  Q
    |||||||||||||||||||||||||||||    
T  27277782 atgaagcacatacactcctcggattagac 27277810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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