View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15658_low_1 (Length: 871)

Name: NF15658_low_1
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15658_low_1
NF15658_low_1
[»] chr1 (1 HSPs)
chr1 (107-855)||(35889401-35890168)


Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 107 - 855
Target Start/End: Original strand, 35889401 - 35890168
Alignment:
Q  107 acgttgcaaaatgattaaaatatctgattgcccagtagttatcgtgcacgtcacagatttcgccatgtatgtattttaagcaataagcacgtattccttt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||||||||||||||||    
T  35889401 acgttgcaaaatgattaaaatatctgattgcccagtagttatcgtgcacgtcacagattttgccatgtat----tttaagcaataagcacgtattccttt 35889496  T
Q  207 cacattcccaaaccacccaaaatacttcaaaccatggttcctgtatagtataattaacgcctctttaatttcgatttaacacgtaacattttctaaccat 306  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889497 cacattcccaaaccacccaaaatacttcaaaccatggtttctgtatagcataattaacgcctctttaatttcgatttaacacgtaacattttctaaccat 35889596  T
Q  307 tgcttcttaacaaagt-aaagttcaacaaagaaaatacgaatctaaggacggtttcataaaacagatacagaaattaaattcacaaatcaaaattagaga 405  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35889597 tgcttcttaacaaagttaaagttcaacaaataaaataagaatctaaggacggtttcataaaacagatgcagaaattaaattcacaaatcaaaattagaga 35889696  T
Q  406 aaacagaaaacctgattcattaggatttgtagagataatacaagaacattagatatgttcctatcaaagaatttacagcaacaacttcctaata-----a 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |    
T  35889697 aaacagaaaacctgattcattaggatttgtagagataatacaagaacattagatatgttcctatcaaagaatttacagcaacaacttcctaataatatta 35889796  T
Q  501 tattatattatgataataaaatccaactc--------------taataaaccctcaaatttcacacatcactaaaaatccccaaattaaaccctaatttt 586  Q
    |||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35889797 tattatattatgataataaaatccaactctaatactcatataataataaaccctcaaatttcacacatcactaaaaattcccaaattaaaccctaatttt 35889896  T
Q  587 cacttcttagctttcttcaccggagtcttaacactcttcggcttctttgcaaccaccttcttcgccgctttcttcaccggcgtagccttaacactctttg 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35889897 cacttcttagctttcttcaccggagtcttaacactcttcggcttctttgcaaccaccttcttcgccgctttcttcaccggcgtagccttcacactctttg 35889996  T
Q  687 ctttcggcttcacaacagccttaggcttcgccgctgcttttggctttgcggcagctttcggcttca---cagcagctttcgcctttggcttagttgcagc 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  35889997 ctttcggcttcacaacagccttaggcttcgccgctgcttttggctttgcggcagctttcggcttcacagcagcagctttcgcctttggcttagttgcagc 35890096  T
Q  784 cttagcggctggcttggtaacagccttagccttcttagcaggagcaatagcggccttcaccggagcagtttt 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890097 cttagcggctggcttggtaacagccttagccttcttagcaggagcaatagcggccttcaccggagcagtttt 35890168  T

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