View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_13 (Length: 406)
Name: NF15658_low_13
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 252 - 359
Target Start/End: Original strand, 44301123 - 44301230
Alignment:
| Q |
252 |
aattatgttattttgcctctggaagttatcttcttaatcctgttttgcttttttgatcagtatggaggatcaaatcttacatgacatttgcactaaatgt |
351 |
Q |
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| T |
44301123 |
aattatgttattttgcctctggaaattatcttcttaaccttgttttgctttgttgatcagtatggaggatcaaatcttacatgacatttgcactaaatgt |
44301222 |
T |
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| Q |
352 |
taaactta |
359 |
Q |
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| T |
44301223 |
taaactta |
44301230 |
T |
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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 44300978 - 44301058
Alignment:
| Q |
107 |
aagcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaatgtgcagttcatggatctatttcagat |
187 |
Q |
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| T |
44300978 |
aagcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaaagtgcagttcatggatctatttcagat |
44301058 |
T |
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Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 44312084 - 44312160
Alignment:
| Q |
330 |
acatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaa |
406 |
Q |
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| T |
44312084 |
acatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaa |
44312160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 44306213 - 44306304
Alignment:
| Q |
318 |
ggatcaaatctta-catgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagc--agagataggatcaactgttaa |
406 |
Q |
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| T |
44306213 |
ggatcaagtcttaacatgacatttgcactaaatgttaaacttaagaatcacatagacaatcttgacagcagagagataggatcaagtgttaa |
44306304 |
T |
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Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 43895789 - 43895870
Alignment:
| Q |
318 |
ggatcaaatctta-catgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatca |
398 |
Q |
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| T |
43895789 |
ggatcaagtcttaacatgacatttgcactaaatgttaaacttatgaatcacatagacaatcttgacggcagagataggatca |
43895870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 44311846 - 44311986
Alignment:
| Q |
26 |
atttcgatatccttaa-attaatcttcaatgttaagccgttaagagaataataatagaaaacataataa-ctcgaacaatccaaagcatgatgcggacac |
123 |
Q |
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| T |
44311846 |
attttgatatcctttacattaatcttcaatgttaagctattaaaagaacaatac---aaaacataataaactcgagcaatccatagcatgatgcggacat |
44311942 |
T |
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| Q |
124 |
tgcctaattaagtcattgcagatatattatgataaaatgtgcagttc |
170 |
Q |
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| T |
44311943 |
tgcctagttaagtcattgc--atatattatgattaaa-gtgcagttc |
44311986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 44300938 - 44300981
Alignment:
| Q |
18 |
caaatactatttcgatatccttaaattaatcttcaatgttaagc |
61 |
Q |
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| T |
44300938 |
caaatactatttcgatatccttaaattaatcttcaatgttaagc |
44300981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 44305733 - 44305778
Alignment:
| Q |
361 |
gaatcaaatagataatcttgacagcagagataggatcaactgttaa |
406 |
Q |
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| T |
44305733 |
gaatcacatagatattcttgacagcagagatgggatcaattgttaa |
44305778 |
T |
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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 8159474 - 8159414
Alignment:
| Q |
346 |
aaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaa |
406 |
Q |
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| T |
8159474 |
aaatgttaaacttaagaatcaaatagataatattgacaacagagataggatcaagtgttaa |
8159414 |
T |
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