View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_14 (Length: 397)
Name: NF15658_low_14
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 1743386 - 1743016
Alignment:
| Q |
15 |
tctctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaa |
114 |
Q |
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| T |
1743386 |
tctctatgccagaactgcagatcattggaagaaatttcattcttccaatgcttcaagatatcccaagatggaattgcttctgctatccgaatgaggccaa |
1743287 |
T |
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| Q |
115 |
gtttgtcttccatttcttttaacattgaaaagaaaagaatacatggacctggtttgacacccctacctattaacttggatttgattgactcattcgtgag |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||| |
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| T |
1743286 |
gtttgtcttccatttcttttaacatcgaaaagaaaagaatacatggacctggtttgactcccttacctattaacttggatttgatcgattcattcgtgag |
1743187 |
T |
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| Q |
215 |
cttgaacagattaaatgctattgatttgtcaaattcttttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaactt |
314 |
Q |
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| T |
1743186 |
cttgaaaagattaaatgctattgatttatcaaattcttttatatcggatgagtttcttatctcagtcgcagacggtgctgttaattttctgaaaaaactt |
1743087 |
T |
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| Q |
315 |
gtcttgcaagactgttgcaactttacattttcaggaatcttttatgttttatccaaatgtcaatatgttca |
385 |
Q |
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| T |
1743086 |
gtccttcaagactgttgcaactttacattttcaggaatattttatgttttatccaaatgtcaatatgttca |
1743016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 2006996 - 2007366
Alignment:
| Q |
15 |
tctctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaa |
114 |
Q |
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| T |
2006996 |
tctctatgccagaactgtagatcactggaagaaattttattcttccaatgtttcaaaatatcccaagttggaattgcttctgcgatccgaatgatgccaa |
2007095 |
T |
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| Q |
115 |
gtttgtcttccatttcttttaacattgaaaagaaaagaatacatggacctggtttgacacccctacctattaacttggatttgattgactcattcgtgag |
214 |
Q |
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| T |
2007096 |
gtttggcttcgatatcctttaacattgaaaagaaaagaagacatggacctggtttgacacccctacctattaacttggatttgatcgattcattcgtgag |
2007195 |
T |
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| Q |
215 |
cttgaacagattaaatgctattgatttgtcaaattcttttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaactt |
314 |
Q |
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| T |
2007196 |
cttgaagagattaaaagctattgatttgtcaaattcctttatatcggatgagtttcttatctcagttgcaaagggtgctgttgagtgtctgaaaaaactt |
2007295 |
T |
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| Q |
315 |
gtcttgcaagactgttgcaactttacattttcaggaatcttttatgttttatccaaatgtcaatatgttca |
385 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2007296 |
gtcctgcaagactgttgcaactttacattttcaggaatcttttatgttttatccaaatgtcaatatgttca |
2007366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 46 - 362
Target Start/End: Original strand, 1498475 - 1498791
Alignment:
| Q |
46 |
aaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagtttgtcttccatttcttttaacattgaaaa |
145 |
Q |
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|||||||||||||| |||||| |||||| |||||| ||| ||| || ||| ||| ||| | || |||||| |||||||||||||||| ||||||| |
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| T |
1498475 |
aaatttcattcttcacatgttttaagataacccaagttggccttgtttgtgcaatcaaaataattcctagtttgggttccatttcttttaacgttgaaaa |
1498574 |
T |
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| Q |
146 |
gaaaagaatacatggacctggtttgacacccctacctattaacttggatttgattgactcattcgtgagcttgaacagattaaatgctattgatttgtca |
245 |
Q |
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||||||| ||||||||||||| |||| ||||||||||||||| |||||||||| ||||||||||| || || || ||||||| ||||||| ||| ||| |
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| T |
1498575 |
gaaaagactacatggacctggattgaaacccctacctattaaattggatttgactgactcattcgctagtttaaaatgattaaaagctattggtttctca |
1498674 |
T |
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| Q |
246 |
aattcttttatatcagatgagtttcttatctcagtcgcaaacgcttctgctgattgtctgaaaaaacttgtcttgcaagactgttgcaactttacatttt |
345 |
Q |
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| T |
1498675 |
aactcttttatctcgaatggttttcttatctcagttgcagaccatggtcgtgattttcttaaaatattggtcctccaatactggtgtaactttaaatttt |
1498774 |
T |
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| Q |
346 |
caggaatcttttatgtt |
362 |
Q |
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|||||||| |||||||| |
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| T |
1498775 |
caggaatcatttatgtt |
1498791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 373967 - 374024
Alignment:
| Q |
183 |
attaacttggatttgattgactcattcgtgagcttgaacagattaaatgctattgatt |
240 |
Q |
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||||||||| ||||||| | |||||||||||||| || |||||||||| |||||||| |
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| T |
373967 |
attaacttgaatttgatcgtttcattcgtgagcttcaaaagattaaatgttattgatt |
374024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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