View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15658_low_15 (Length: 382)

Name: NF15658_low_15
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15658_low_15
NF15658_low_15
[»] chr6 (14 HSPs)
chr6 (44-358)||(33869488-33869805)
chr6 (170-352)||(26087145-26087324)
chr6 (170-349)||(25549393-25549569)
chr6 (159-351)||(29300419-29300615)
chr6 (290-354)||(25526435-25526499)
chr6 (1-49)||(33866036-33866084)
chr6 (255-314)||(34257873-34257932)
chr6 (195-322)||(34274359-34274487)
chr6 (307-347)||(34278032-34278072)
chr6 (263-340)||(29148902-29148979)
chr6 (159-214)||(25490554-25490609)
chr6 (315-354)||(32960274-32960313)
chr6 (48-181)||(29145545-29145679)
chr6 (159-213)||(29151829-29151883)
[»] chr4 (2 HSPs)
chr4 (62-220)||(54294732-54294892)
chr4 (307-354)||(37896061-37896108)
[»] chr7 (1 HSPs)
chr7 (36-138)||(42446574-42446677)
[»] chr8 (1 HSPs)
chr8 (117-349)||(5709457-5709693)
[»] chr3 (2 HSPs)
chr3 (284-349)||(2885897-2885962)
chr3 (117-220)||(2885726-2885830)
[»] chr2 (3 HSPs)
chr2 (284-349)||(16186086-16186151)
chr2 (117-220)||(16186218-16186322)
chr2 (274-347)||(7523642-7523715)
[»] scaffold0613 (1 HSPs)
scaffold0613 (306-351)||(4010-4055)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 44 - 358
Target Start/End: Original strand, 33869488 - 33869805
Alignment:
Q  44 catacttccaattagagaaataagtagttaattgtttttattgttttcaaaagaagtatatggttgtggttattgggatattacctagtaaacaatgcga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869488 catacttccaattagagaaataagtagttaattgtttttattgttttcaaaagaagtatatggttgtggttattgggatattacctagtaaacaatgcga 33869587  T
Q  144 cttgtcaattgtgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgtttgc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33869588 cttgtcaattgtgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgttcgc 33869687  T
Q  244 atagt---cttatctggtttcaatatcaataaaaagagtgatcttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaa 340  Q
    ||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869688 atacttaagttatctggtttcaatatcaataaaaagagtgatcttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaa 33869787  T
Q  341 ctttataatctgattagc 358  Q
    ||||||||||||||||||    
T  33869788 ctttataatctgattagc 33869805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 170 - 352
Target Start/End: Complemental strand, 26087324 - 26087145
Alignment:
Q  170 ttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgtttgcatagtcttatctggtttcaatatcaa 269  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||| | |||  || || ||||||| | || ||| |  | ||||||||||| |||||||    
T  26087324 ttgtcaagtatactaagaaactacttgatcttgcttttgcatttttagtttgaatctt-actcgttttattcgcaaa--catatctggtttctatatcaa 26087228  T
Q  270 taaaaagagtgatcttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaactttataatctg 352  Q
    ||||| || ||| |||||||||||||| |||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  26087227 taaaatgaatgaccttttgcctttaccgaatgacctctagctttaagtagaaataatttatatatggaaaactttataatctg 26087145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 170 - 349
Target Start/End: Complemental strand, 25549569 - 25549393
Alignment:
Q  170 ttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgtttgcatagtcttatctggtttcaatatcaa 269  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||| | |||  || || ||||||| | || ||| |  ||||||||||||| |||||||    
T  25549569 ttgtcaagtatattaataaactacttgatcttgcttttgcatttttagtttgaatctt-actcgttttattcgcaaa--cttatctggtttctatatcaa 25549473  T
Q  270 taaaaagagtgatcttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaactttataat 349  Q
    ||||| || ||| |||||||||||||| |||||||||||| |||| |||||||||| ||||||| |||||||||||||||    
T  25549472 taaaatgaatgaccttttgcctttaccgaatgacctctagctttacgtagaaataatttatatatggaaaactttataat 25549393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 159 - 351
Target Start/End: Original strand, 29300419 - 29300615
Alignment:
Q  159 tatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactc--gttctgtttgcatagtcttatctg 256  Q
    |||||||||| |||||||||||||||  ||||||||| | |||||||||||||||| |||||  ||||||||||  ||| | ||| || |  ||||||||    
T  29300419 tatcacaattattgtcaagtaaactaggaaactacttgaacttgcttttgcatttttattttgaatgtttactcttgttttattttcaaa--cttatctg 29300516  T
Q  257 gtttcaatatcaataaaaagagtgatcttttgcctttaccaaatgacctc----tagttttatgtagaaataacttatatacggaaaactttataatct 351  Q
    | ||| |||||||||||| || |||| |||||| |||| | |||| ||||    ||||| ||||||| ||||||||||||| |||||||||||||||||    
T  29300517 gcttctatatcaataaaatgaatgatattttgcttttatcgaatggcctccctttagttctatgtagtaataacttatatatggaaaactttataatct 29300615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 25526499 - 25526435
Alignment:
Q  290 ctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaactttataatctgat 354  Q
    ||||||| ||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  25526499 ctttacccaattacctctagttttaagtagaaacaacttatatatggaaaactttataatctgat 25526435  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33866036 - 33866084
Alignment:
Q  1 aagaatatttattttttctcttggtgaacctgaagaaggaaagcatact 49  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33866036 aagaatatttattttttctcttggtgtacctgaagaaggaaagcatact 33866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 34257932 - 34257873
Alignment:
Q  255 tggtttcaatatcaataaaaagagtgatcttttgcctttaccaaatgacctctagtttta 314  Q
    ||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  34257932 tggtttctatatcaataaaaagattgatcttttgcctttaccgaatgatctctagtttta 34257873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 322
Target Start/End: Complemental strand, 34274487 - 34274359
Alignment:
Q  195 ttatcttgcttttgcattttgattttccatgtttact--cgttctgtttgcatagtcttatctggtttcaatatcaataaaaa-gagtgatcttttgcct 291  Q
    |||||||||||||||||||| |||||  |||||||||  | || | |||||| |  ||| | ||||||| |||||| |||||| || ||||||||| |||    
T  34274487 ttatcttgcttttgcatttttattttgaatgtttacttacattttatttgcaaa--cttgtgtggtttctatatcagtaaaaaagattgatcttttacct 34274390  T
Q  292 ttaccaaatgacctctagttttatgtagaaa 322  Q
    ||||| |||||||||||||||||||| ||||    
T  34274389 ttaccgaatgacctctagttttatgtggaaa 34274359  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 34278072 - 34278032
Alignment:
Q  307 tagttttatgtagaaataacttatatacggaaaactttata 347  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  34278072 tagttttatgtagaaataacttatatatggaaaactttata 34278032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 29148979 - 29148902
Alignment:
Q  263 atatcaataaaaagagtgatcttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaa 340  Q
    |||||||||||  || ||||| |||||| ||  ||||||  || ||||||||||||||||||||||||||| ||||||    
T  29148979 atatcaataaattgaatgatcatttgccgttgtcaaatggtctttagttttatgtagaaataacttatatatggaaaa 29148902  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 25490554 - 25490609
Alignment:
Q  159 tatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcatttt 214  Q
    |||||||||| ||||||| || ||||| || |||||| ||||||||||||||||||    
T  25490554 tatcacaattattgtcaattatactaagaatctacttgatcttgcttttgcatttt 25490609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 32960313 - 32960274
Alignment:
Q  315 tgtagaaataacttatatacggaaaactttataatctgat 354  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  32960313 tgtagaaataacttatatatgaaaaactttataatctgat 32960274  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 29145545 - 29145679
Alignment:
Q  48 cttccaattagagaaataagtagttaattgtttttattgttttcaa-aagaagtatatggttgtggttattgggatattacctagtaaacaatgcgactt 146  Q
    ||||||||| ||| |  |||||| ||||||||||| ||||| |||  |||| ||||||| |||||||| ||| |||||||| |  ||  |||   |  ||    
T  29145545 cttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatattacattttatgcaaactggttt 29145644  T
Q  147 gtcaattgtgcttatcacaattgttgtcaagtaaa 181  Q
    ||||||||||| |||||||||| ||||||||||||    
T  29145645 gtcaattgtgcatatcacaattattgtcaagtaaa 29145679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 29151883 - 29151829
Alignment:
Q  159 tatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattt 213  Q
    |||||||||| |||||||||||||||| | |||  || |||||||||||||||||    
T  29151883 tatcacaattattgtcaagtaaactaagacactggttgatcttgcttttgcattt 29151829  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 54294892 - 54294732
Alignment:
Q  62 aataagtagttaattgtttttattgttttca-aaagaagtatatggttgtggtta-ttgggatattacctagtaaacaatgcgacttgtcaattgtgctt 159  Q
    ||||||| |||||||||| || |||||| || |||||| |||||| ||||||||| ||||| |||||||| ||| |||| | |||| |||||||||| ||    
T  54294892 aataagttgttaattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgactcgtcaattgtgttt 54294793  T
Q  160 atcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgatttt 220  Q
     ||||||||  | | || | |||||| ||||||||| ||||| |||| ||||||| |||||    
T  54294792 gtcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttatttt 54294732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 37896061 - 37896108
Alignment:
Q  307 tagttttatgtagaaataacttatatacggaaaactttataatctgat 354  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  37896061 tagttttatgtagaaataacttatatttggaaaactttataatctgat 37896108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 42446574 - 42446677
Alignment:
Q  36 aaggaaagcatacttccaattagagaaataagtagttaattgtttttattgttttca-aaagaagtatatggttgtggttattgggatattacctagtaa 134  Q
    ||||||| ||| ||||||||| ||| ||||| || |||||||||||| |||||||||  |||| ||||||| |||||||| ||| |||||||||| |||     
T  42446574 aaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatattaccttgtat 42446673  T
Q  135 acaa 138  Q
    ||||    
T  42446674 acaa 42446677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 349
Target Start/End: Complemental strand, 5709693 - 5709457
Alignment:
Q  117 tgggatattacctagtaaacaatgcgacttgtcaattg-tgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttg 215  Q
    ||||||||||| | |||||||| | ||||| |||| || |||||| |||||||  |||||  |||| ||  ||||||||| ||||||||||||||||||     
T  5709693 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 5709594  T
Q  216 attttccatgtttac--tcgttctgtttgcatagtcttatctggtttcaatatcaataaaaagagtgatct---tttgcctttaccaaatgacctctagt 310  Q
    |||||  |||||| |  ||||| | |||||| | ||  |||||  ||| |||| |||||||| |   || |   |||||| ||| | |||||| ||||||    
T  5709593 atttttaatgttttcgctcgttttatttgcaaactc--atctgacttctatattaataaaaaaaaaaatatctttttgcccttaacgaatgacttctagt 5709496  T
Q  311 tttatgtagaaataacttatatacggaaaactttataat 349  Q
    ||||||||||| ||||||| ||| |||||| ||||||||    
T  5709495 tttatgtagaagtaacttacatatggaaaaatttataat 5709457  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 2885897 - 2885962
Alignment:
Q  284 ttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaactttataat 349  Q
    ||||||| ||| | |||||| ||||||||||||||||| ||||||| ||| |||||| ||||||||    
T  2885897 ttttgcccttaacgaatgacttctagttttatgtagaagtaacttacatatggaaaaatttataat 2885962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 2885726 - 2885830
Alignment:
Q  117 tgggatattacctagtaaacaatgcgacttgtcaattg-tgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttg 215  Q
    ||||||||||| | |||||||| | ||||| |||| || |||||| |||||||  |||||  |||| ||  ||||||||| ||||||||||||||||||     
T  2885726 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 2885825  T
Q  216 atttt 220  Q
    |||||    
T  2885826 atttt 2885830  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 16186151 - 16186086
Alignment:
Q  284 ttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaactttataat 349  Q
    ||||||| ||| | |||||| ||||||||||||||||| ||||||| ||| |||||| ||||||||    
T  16186151 ttttgcccttaacgaatgacttctagttttatgtagaagtaacttacatatggaaaaatttataat 16186086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 16186322 - 16186218
Alignment:
Q  117 tgggatattacctagtaaacaatgcgacttgtcaattg-tgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttg 215  Q
    ||||||||||| | |||||||| | ||||| |||| || |||||| |||||||  |||||  |||| ||  ||||||||| ||||||||||||||||||     
T  16186322 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 16186223  T
Q  216 atttt 220  Q
    |||||    
T  16186222 atttt 16186218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 7523715 - 7523642
Alignment:
Q  274 aagagtgatcttttgcctttaccaaatgacctctagttttatgtagaaataacttatatacggaaaactttata 347  Q
    |||| ||||||||||||| |||  ||||||||||| ||||||||||| |||  ||||||  ||||| |||||||    
T  7523715 aagaatgatcttttgcctctactgaatgacctctaattttatgtagatatagattatatttggaaatctttata 7523642  T

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Target: scaffold0613 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 4010 - 4055
Alignment:
Q  306 ctagttttatgtagaaataacttatatacggaaaactttataatct 351  Q
    |||||||||||||||||||||||  ||| ||||||||| |||||||    
T  4010 ctagttttatgtagaaataacttcaatatggaaaacttgataatct 4055  T

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