View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_2 (Length: 830)
Name: NF15658_low_2
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 229 - 815
Target Start/End: Complemental strand, 37067289 - 37066703
Alignment:
| Q |
229 |
gagtaagaacacgtaccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgatgaaaagcacgtaaacaacgacaaaaaggtgatg |
328 |
Q |
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| T |
37067289 |
gagtaagagcacgtaccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgataaatagcacgtaaacaatgacaaaaaggtgatg |
37067190 |
T |
|
| Q |
329 |
tgaataccaaaatgcattaaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccatggttgggctaaaatgaaagctaca |
428 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
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| T |
37067189 |
tgaataccaaaatgcattgaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccaaggttgtgctaaaatgaaagctata |
37067090 |
T |
|
| Q |
429 |
gccataagcacaaccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgg |
528 |
Q |
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| T |
37067089 |
gccataagcacaaccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgg |
37066990 |
T |
|
| Q |
529 |
gttcatattcttcatctgtggcgtgtaataatcttgggaagtcacaagttaaatgtgaaattgcatgtaatccaaccccaattgcaatgccaaaagctat |
628 |
Q |
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| T |
37066989 |
gttcatattcttcatctgtggcgtgtaataatcttgggaagtcacaagttaaatgtgaaattgcatgtaatccaaccccaattgcaatgccaaaagctat |
37066890 |
T |
|
| Q |
629 |
cacctaaataatagtaagaggnnnnnnnngagttactaattttgtttgcagagtcaaagaaaaatagaagtaatatactatatgattaatccaaaatcta |
728 |
Q |
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| T |
37066889 |
cacctaaataatagcaagaggaaaaaaaagagttactaattttgtttgtagagtcaaagaaaaatagaagtaatatactatatgattaatccaaaatcta |
37066790 |
T |
|
| Q |
729 |
atataccttgtgaaagttaatattgtcatcaaatggaaccaccattccaagcctggtccgactcctaagccaagtgatggtgtttct |
815 |
Q |
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| T |
37066789 |
atataccttgtgaaagttgatattgtcatcaaatggaaccaccattccaagcctggtcctactcctaagccaagtgatggtgtttct |
37066703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 37067499 - 37067360
Alignment:
| Q |
16 |
atgaaattcttaaaaatgtacctttagtatcctcacagatttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaacc |
115 |
Q |
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| T |
37067499 |
atgaaattcttaaaaatgtacctttagtatcctcacagatttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaacc |
37067400 |
T |
|
| Q |
116 |
gcaagatacatccatgtctatatatgtcacataattttgt |
155 |
Q |
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| T |
37067399 |
gcaagatacatccatgtctatatatgtcacataattttgt |
37067360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 242 - 636
Target Start/End: Original strand, 46561636 - 46562030
Alignment:
| Q |
242 |
taccgttttcttataccatttcttgctaaggtaaaggaagtatccatgaatgatgaaaagcacgtaaacaacgacaaaaaggtgatgtgaataccaaaat |
341 |
Q |
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| T |
46561636 |
taccgttttcttgtaccatttcttggagaggtataagaagtatccatggacaataagaagagcataaacaatgacaaagaggtgatgtgaataccaaaaa |
46561735 |
T |
|
| Q |
342 |
gcattaaaaccagtgagtttcttgaggggttttggaaggtttagcctattacgacgaaaccatggttgggctaaaatgaaagctacagccataagcacaa |
441 |
Q |
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| T |
46561736 |
gcattgaaaccagtgagcttcttcaaaagtggagggagcttaagcttgtttcttcggaaccaaggttgggccaaagtaaaagctatagccataagcacta |
46561835 |
T |
|
| Q |
442 |
ccatgaccacaccggtccaaccctcggttcctttaacgaaccaccaataattattaggtctttcatctccaaaaaattgtttcatgggttcatattcttc |
541 |
Q |
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| T |
46561836 |
ccatgactatcccagtccaaccctctgtaccttttacaaaccaccaataattgttgggcctatgatcaccaaaaaatttcttcatgggaacatattcagc |
46561935 |
T |
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| Q |
542 |
atctgtggcgtgtaataatcttgggaagtcacaagttaaatgtgaaattgcatgtaatccaaccccaattgcaatgccaaaagctatcacctaaa |
636 |
Q |
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| T |
46561936 |
atctgttgcatgtaatagccttgggaagtcacatgttaaatgggaaatagcatgtaaccctacaccaattgcaatgccaaaagctatcacctaaa |
46562030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 46561460 - 46561539
Alignment:
| Q |
55 |
tttgtagccagatctaaatgcacgaagtagtctttcgcatccgtatagtatcattggaaccgcaagatacatccatgtct |
134 |
Q |
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| T |
46561460 |
tttgtagccagacctaaaagcacgaagtagtcgctcacatgcgtatattatcataggaatggcaagatacatccaagtct |
46561539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 767
Target Start/End: Original strand, 19071502 - 19071537
Alignment:
| Q |
732 |
taccttgtgaaagttaatattgtcatcaaatggaac |
767 |
Q |
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| T |
19071502 |
taccttgtgaaagttaatattgtcatcaaagggaac |
19071537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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