View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15658_low_20 (Length: 318)

Name: NF15658_low_20
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15658_low_20
NF15658_low_20
[»] chr5 (1 HSPs)
chr5 (10-300)||(35004805-35005098)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 35004805 - 35005098
Alignment:
Q  10 atgaacattcaatgaaataagaattagccaggcttgacaaaagagaaataatta---aatttttaaataaggttattagagagatttgaattaaggttga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||    
T  35004805 atgaacattcaatgaaataagaattagccaggcttgacaaaagagaaataattattaaatttttaaatgaggttattagagagatttgaattaaggttga 35004904  T
Q  107 tgaatgaagaagaggtaatgagaaacnnnnnnnttaaccataggttcaagtgggtggggttaattggaaggacttttgtttttctaccttttgtctttgg 206  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35004905 tgaatgaagaagaggtaatgagaaacaaaaaaattaaccataggttcaagtgggtggggttaattggaaggacttttgtttttctaccttttgtctttgg 35005004  T
Q  207 tgaggcttttgtatagttaaatggttattctatatttcatgagagcggaatattaggctatatattctctttgtttctcatgcttttatagttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35005005 tgaggcttttgtatagttaaatggttattctatatttcatgagagcggaatattaggctatatattctctttgtttctcatgcttttatagttt 35005098  T

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