View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_25 (Length: 250)
Name: NF15658_low_25
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 5900639 - 5900876
Alignment:
| Q |
13 |
aatatcaaccactcattggatcacaattctccgcaatatcaagaaccataacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcac |
112 |
Q |
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| T |
5900639 |
aatatcaaccactcattggatcacaattctccgcaatatcaagaaccacaacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcac |
5900738 |
T |
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| Q |
113 |
atacactcctcggattagacgtgccccaggttcagacatgtgtttgtgtttgtgtcgtgtccatattcgtgcttcatatgtgtataataattaaccagcc |
212 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
5900739 |
atacacacctcggattagacgtgtcccaggttcagacatgtgtttgtgtctgtgtcgtgtccgtattcgtgattcatatgtgtataataattaaccagcc |
5900838 |
T |
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| Q |
213 |
ctaacaaaaacataactaacataaccttatcaagtaaa |
250 |
Q |
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| T |
5900839 |
ctaacaaaaacataactaacatcaccttatcaagtaaa |
5900876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 5861797 - 5861854
Alignment:
| Q |
13 |
aatatcaaccactcattggatcacaattctccgcaatatcaagaaccataacacgacc |
70 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||| || | ||||||| |
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| T |
5861797 |
aatatcaaccactcattagagcacaattctccgcaatatcaagaatcaaagcacgacc |
5861854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 27277782 - 27277810
Alignment:
| Q |
104 |
atgaagcacatacactcctcggattagac |
132 |
Q |
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| T |
27277782 |
atgaagcacatacactcctcggattagac |
27277810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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