View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_27 (Length: 243)
Name: NF15658_low_27
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42682768 - 42682989
Alignment:
| Q |
1 |
cattatctgtcctagaaaacaaacaagaaaaacctagtnnnnnnnctcgtcagttttctttttcatcacattctttcgtatcaatacacaattttatttc |
100 |
Q |
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| T |
42682768 |
cattacctgtcctagaaaacaaacaagaaaaacctagtaaaaaaactcgtcagttttctttttcatcacattctttcgtatcaatacacaattttatttc |
42682867 |
T |
|
| Q |
101 |
accatcatcaagaatggaacaagccaacccagggattaaggacatggattat-nnnnnnnngtgacaaatacaagaatgatcaattatgcaacatcttga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
42682868 |
accatcatcaagaatggaacaagccaacccagggattaagaacatggattataaaaaaaaagtgacaaatacaagaatggtcaattatgcaacatcttga |
42682967 |
T |
|
| Q |
200 |
tccaaatcgtgaacatcttaac |
221 |
Q |
| |
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|||||||||||||| ||||||| |
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|
| T |
42682968 |
tccaaatcgtgaacgtcttaac |
42682989 |
T |
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