View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_31 (Length: 237)
Name: NF15658_low_31
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1743516 - 1743736
Alignment:
| Q |
1 |
ctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatcttt |
100 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
1743516 |
ctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatcttt |
1743615 |
T |
|
| Q |
101 |
gtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1743616 |
gtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgt |
1743715 |
T |
|
| Q |
201 |
cttctagttcaccattgaagt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1743716 |
cttctagttcaccattgaagt |
1743736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2006866 - 2006646
Alignment:
| Q |
1 |
ctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatcttt |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2006866 |
ctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatcttt |
2006767 |
T |
|
| Q |
101 |
gtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgt |
200 |
Q |
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| T |
2006766 |
gaaccgagctctcgcaatccatcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagc |
2006667 |
T |
|
| Q |
201 |
cttctagttcaccattgaagt |
221 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
2006666 |
cttcaagttcaccattgaagt |
2006646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
108 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
148 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||| |
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| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 44577603 - 44577524
Alignment:
| Q |
157 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagttgatgatgtccatct |
236 |
Q |
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|||||| ||||||||||||| |||||||||||||||||| | | |||||||||||||||||||| ||||| ||| |||| |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtggatgaggtctatct |
44577524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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