View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15658_low_4 (Length: 679)
Name: NF15658_low_4
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 22 - 498
Target Start/End: Complemental strand, 28111391 - 28110915
Alignment:
| Q |
22 |
ccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111391 |
ccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccgg |
28111292 |
T |
|
| Q |
122 |
acctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
28111291 |
acctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatccggcacgcagcgatttggaccatctg |
28111192 |
T |
|
| Q |
222 |
gagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111191 |
gagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgt |
28111092 |
T |
|
| Q |
322 |
ttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttga |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28111091 |
ttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttga |
28110992 |
T |
|
| Q |
422 |
ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110991 |
ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
28110915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 499 - 668
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
| Q |
499 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
|
| Q |
599 |
caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac |
668 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac |
40383045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 50 - 365
Target Start/End: Complemental strand, 33131674 - 33131359
Alignment:
| Q |
50 |
attgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtggga |
149 |
Q |
| |
|
||||||| |||||||||||| ||||||| || |||||| |||||| ||||| | ||| ||||||||||||| || || ||| |||| |||||||| | |
|
|
| T |
33131674 |
attgtgtgacggcaacagcaatttggactaatcttctgagatggcttggttttgactatcatccaccaccggatcttttctatcattggcagtggtggaa |
33131575 |
T |
|
| Q |
150 |
tgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaa |
249 |
Q |
| |
|
||| | | |||||||||||||| || |||||| |||||||| || ||||| | ||| ||||||| ||||||| | |||||||||| ||||| ||||| |
|
|
| T |
33131574 |
tgactcggctaggaataagaaggttaggaagggttatcggattatttggcatgcggcggtttggactatctggaaaattagaaatgattttatctttaat |
33131475 |
T |
|
| Q |
250 |
aattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatg |
349 |
Q |
| |
|
|| ||| | ||| |||| || ||||||||| |||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| | | | | |
|
|
| T |
33131474 |
aactctgtctgcggtgttgatgaagtggtggaggcaattaaggtgttagcttggcggtgggtattgagtcgcttgaatttgccggtttgtttatttaaag |
33131375 |
T |
|
| Q |
350 |
aatggacgtggaatcc |
365 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
33131374 |
aatggacatggaatcc |
33131359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 392
Target Start/End: Complemental strand, 21867543 - 21867286
Alignment:
| Q |
135 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
234 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21867543 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21867444 |
T |
|
| Q |
235 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
334 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21867443 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21867344 |
T |
|
| Q |
335 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
392 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21867343 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21867286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 392
Target Start/End: Complemental strand, 21923404 - 21923147
Alignment:
| Q |
135 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
234 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21923404 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21923305 |
T |
|
| Q |
235 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
334 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21923304 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21923205 |
T |
|
| Q |
335 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
392 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21923204 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21923147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
241 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
313 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 22 - 498
Target Start/End: Original strand, 24836858 - 24837334
Alignment:
| Q |
22 |
ccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
24836858 |
ccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggatcggtttcaattattatcgaccaccgg |
24836957 |
T |
|
| Q |
122 |
acctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24836958 |
acctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacgcagcgatttggaccatctg |
24837057 |
T |
|
| Q |
222 |
gagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24837058 |
gagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcttggaggtgggttttgagtcgt |
24837157 |
T |
|
| Q |
322 |
ttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttga |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24837158 |
ttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttga |
24837257 |
T |
|
| Q |
422 |
ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837258 |
ggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
24837334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
412 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
480 |
Q |
| |
|
|||||| ||||||| | ||||||||||| | |||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 32 - 498
Target Start/End: Original strand, 34326093 - 34326558
Alignment:
| Q |
32 |
cggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttca |
131 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||| | |||| |||||||| ||||||| |
|
|
| T |
34326093 |
cggatcatcttttcctcaactgtattatggcaacagcagtttgaaccaagcttctgtcgtggctcggtttcaattttcatccgccaccggatttgtttca |
34326192 |
T |
|
| Q |
132 |
tctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttaga |
231 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||| |||||| |||||||| || |||||| | ||| ||||||| || |||||||||||| |
|
|
| T |
34326193 |
tctttggaagtggttggatgagttgtcaaggaataagaagatttggaagggttatcggattatttggcacgccgcggtttggactatttggagagttaga |
34326292 |
T |
|
| Q |
232 |
aatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgc |
331 |
Q |
| |
|
|||||||| ||||| || |||||||||||| | ||||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
34326293 |
aatgacttcattttcaacaattctccttttcgcattgatgagatggtggaggacattaaggtgttagcatggaggtgggttttgagccgcttgaa-ttgc |
34326391 |
T |
|
| Q |
332 |
cggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggta |
431 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||||| |||| ||||||||||||||||| |||| ||| || ||| |||| | || |||||||||| |
|
|
| T |
34326392 |
cggtttgtttgtactacaaatggacttggaatccacaagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggta |
34326491 |
T |
|
| Q |
432 |
tgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
498 |
Q |
| |
|
|||||||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34326492 |
tgctgctgttctgatttttcggctaggagtatatgacagcctcgctgctgtcctgcttctttgcacc |
34326558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 289 - 498
Target Start/End: Original strand, 4028425 - 4028634
Alignment:
| Q |
289 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
388 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
|
| Q |
389 |
ggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
488 |
Q |
| |
|
||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4028525 |
ggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgct |
4028624 |
T |
|
| Q |
489 |
tctttgcacc |
498 |
Q |
| |
|
|||||||||| |
|
|
| T |
4028625 |
tctttgcacc |
4028634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
443 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
488 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 639
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
| Q |
589 |
tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa |
639 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
22793064 |
tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa |
22793016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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