View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_6 (Length: 573)
Name: NF15658_low_6
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 10 - 557
Target Start/End: Complemental strand, 43553547 - 43553000
Alignment:
| Q |
10 |
taatactaggaatagtgaagggatgacagcacttgacattcttgatcaggctatggacagcgtagaaagtaggcaactacaagccatatttatcagagct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553547 |
taatactaggaatagtgaagggatgacagcacttgacattcttgatcaggctatggacagcgtagaaagtaggcaactacaagccatatttatcagagct |
43553448 |
T |
|
| Q |
110 |
ggtggtaaaagaagcatccaatcttcctcattttcacttgaactagataagaacaattctccctcaccagcatataggctttctccatcgcgaaggtata |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43553447 |
ggtggtaaaagaagcatccaatcttcctcattttcacttgaactagataagaacaattctccctcaccagcatatagactttctccatcgcgaaggtata |
43553348 |
T |
|
| Q |
210 |
tccctaatgaaatggaagtgctaactgaaatggtttcttatgattgtataagccctccaccagttagcaaaagctccgattcaagatcgcctcagcctca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553347 |
tccctaatgaaatggaagtgctaactgaaatggtttcttatgattgtataagccctccaccagttagcaaaagctccgattcaagatcgcctcagcctca |
43553248 |
T |
|
| Q |
310 |
agcaagtgagagatttgagaatggaacctataatccgtactacgtttcaccaacaaatttagtgaaacaaaagcatcatcataacaaaggaaaaattgaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553247 |
agcaagtgagagatttgagaatggaacctataatccgtactacgtttcaccaacaaatttagtgaaacaaaagcatcatcataacaaaggaaaaattgaa |
43553148 |
T |
|
| Q |
410 |
aatgtgaatcatactaagaggaaacactatcatgagatgcaccaagaggcattactaaatgcaagaaacaccattgtattagtggctgttttaattgcca |
509 |
Q |
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| T |
43553147 |
aatgtgaatcatactaagaggaaacactatcatgagatgcaccaagaggcattactaaatgcaagaaacactattgtgttagtggctgttttaattgcca |
43553048 |
T |
|
| Q |
510 |
ccgtaacttttgctgctggtattagtccacctggtggtgtgtaccaag |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553047 |
ccgtaacttttgctgctggtattagtccacctggtggtgtgtaccaag |
43553000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 557
Target Start/End: Complemental strand, 43549546 - 43549002
Alignment:
| Q |
10 |
taatactaggaatagtgaagggatgacagcacttgacattcttgatcaggctatggacagcgtagaaagtaggcaactacaagccatatttatcagagct |
109 |
Q |
| |
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|||||||||||||| ||||||| | ||||| ||||| |||||||||||||||||||||| | |||| ||| ||||||||||||||||||||||||| | |
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| T |
43549546 |
taatactaggaataatgaagggctcacagctcttgatattcttgatcaggctatggacaatgccgaaaatagacaactacaagccatatttatcagagat |
43549447 |
T |
|
| Q |
110 |
ggtggtaaaagaagcatccaatcttcctcattttcacttgaactagataagaacaattctccctcaccagcatataggctttctccatcgcgaaggtata |
209 |
Q |
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|| ||||||||||||| | |||| || ||||||||||||||||| || | || ||||||||||||| ||| ||||| |||| || |||||||||| |
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| T |
43549446 |
ggaggtaaaagaagcacaccatct---tctttttcacttgaactagacaacaccagttctccctcaccaacatctaggcattctttgtcacgaaggtata |
43549350 |
T |
|
| Q |
210 |
tccctaatgaaatggaagtgctaactgaaatggtttcttatgattgtataagccctccaccagttagcaaaagctccgattcaagatcgcctcagcctca |
309 |
Q |
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| | || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | || || | ||| ||||||||||| |
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| T |
43549349 |
tatcgaaggaaatggaagtgctgactgaaatggtttcttatgactgtataagccctccaccagttagcgaaagcactgaatctatatcacctcagcctca |
43549250 |
T |
|
| Q |
310 |
agcaagtgagagatttgagaatggaacctataatccgtactacgtttcaccaacaaatttagtgaaacaaaagcatcatcataacaaaggaaaaattgaa |
409 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43549249 |
agtaagtgagagatttgagaatggaacctataatccatactacttctcgccaacaaatttagtgaaacaaaagcaccatcataacaaaggaaaaattgaa |
43549150 |
T |
|
| Q |
410 |
aatgtgaatcatactaagaggaaacactatcatgagatgcaccaagaggcattactaaatgcaagaaacaccattgtattagtggctgttttaattgcca |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
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| T |
43549149 |
aatgtgaatcatactaagaggaaacactatcatgagatgcacaaagaggcattactaaatgcaagaaacactattgtgttagtggctgttttaattgcta |
43549050 |
T |
|
| Q |
510 |
ccgtaacttttgctgctggtattagtccacctggtggtgtgtaccaag |
557 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43549049 |
ctgtaacttttgctgctggtattagtccacctggtggtgtgtaccaag |
43549002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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