View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_7 (Length: 504)
Name: NF15658_low_7
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 404
Target Start/End: Original strand, 26633691 - 26634077
Alignment:
| Q |
21 |
tacaaagtgtagaataataatttaggagggtgtaatagaaataacaagggtgcgaaaagtttcttcctttgttaaaacggaaaggcccaatatttcacag |
120 |
Q |
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| T |
26633691 |
tacaaagtgtagaataataatttaggagggtgtaatagaaataacaagggtgcaaaaagtttcttcctttgttaaaacggaaaggcccaatatttcacag |
26633790 |
T |
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| Q |
121 |
ttacattctacaata---tttcagaagcttcactacacnnnnnnntctcagtttctctcttgtggtagtagcgaaccctagatcgaatcatgtctggagg |
217 |
Q |
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| T |
26633791 |
ttacattctacaataatatttcagaagcttcactacacaaaaaaatctcagtttctctcttgtggtagtagcgaaccctagatcgaatcatgtctggagg |
26633890 |
T |
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| Q |
218 |
gtacggtcacgatgccggaggtggctctgcgccaccttcctatggtgctagtggtggttacggaggcggaggaggtggtggctatgctggtggatatgct |
317 |
Q |
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| T |
26633891 |
gtacggtcacgatgccggaggtggctctgcgccaccttcctatggtgctagtggtggttacggaggcggaggaggtggtggctatgctggtggatatgct |
26633990 |
T |
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| Q |
318 |
gggaatgaaagcggtggtggttacgcagcgaaaggaagcggaaatggtggtggaagaggatatggaggtaacgatggtggaggttac |
404 |
Q |
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| T |
26633991 |
gggaatgaaagcggtggtggttacgcagcgaaaggaagcggaaacggtggtggtagaggatatggaggtaacgatggtggaggttac |
26634077 |
T |
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