View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15658_low_8 (Length: 496)
Name: NF15658_low_8
Description: NF15658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15658_low_8 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Original strand, 20933 - 21404
Alignment:
| Q |
11 |
atgaaccacataaagaatgataaaagaaacacctaagaccagatgatgatttaccatcaaagttgccatcaacaattcgactagcatcattgtaactatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
20933 |
atgaaccacataaagaatgataaaagaaacacctaagaccagatgatgatttaccatcaaagttgccatcaacaattcgactagcatccttgtaattatc |
21032 |
T |
|
| Q |
111 |
cattgaaatgacaacaatgctaggcatgaagttgagtatcttttcggtaaatatagtctttccagctcccgaaggacccgccagcccaaccaatattatt |
210 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21033 |
cattgaaatgacagcaatgctaggcatgaagttgagtatcttttcggtaaatatagtctttccagctcccgaaggacccgccaccccaaccaatattatt |
21132 |
T |
|
| Q |
211 |
ccatcattcttttgggctaacaattggcatgcacgaatcacaatgacaaaccccttctcgaatgatagttgatcttgtattgaagaaatcccatagcgat |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21133 |
ccatcattattttgggctaacaattggcatgcacgaatcacaatgaaaaaccccttctcgaatgatagttgatcttgtattgaagaaatcccatagcgat |
21232 |
T |
|
| Q |
311 |
tagagttttccttttaaccaaatgaacttgatcttttcaaagaccaagacgtttatgatgggaatcagaactagaagtatcgttcgccatcgaacaactc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21233 |
tagagttttccttttaaccaaatgaacttgatcttttaaaagaccaagacgtttatgatgggaatcagaactagaagtatcgttcgccatcgaacaactc |
21332 |
T |
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| Q |
411 |
ttaatttccttt-aaaaaacagaagatatatattaaatggaaaaacaaataaacctacaacaacatcaatgt |
481 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21333 |
ttaatttcctttaaaaaaacagaagatatatattaaatggaaaaacaaataaacctacaacaacatcaatgt |
21404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 28072119 - 28071644
Alignment:
| Q |
11 |
atgaaccacataaagaatgataaaagaaacacctaagaccagatgatgatttaccatcaaagttgccatcaacaattcgactagcatcattgtaactatc |
110 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
28072119 |
atgaaccacagaaagaatgataaaagaaacacataagaccagatgataatttaccatcaaagttgccatcaacaattcgactagcatcgttgtaattatc |
28072020 |
T |
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| Q |
111 |
cattgaaatgacaacaatgctaggcatgaagttgagtatcttttcggtaaatatagtctttccagctcccgaaggacccgccagcccaaccaatattatt |
210 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |
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| T |
28072019 |
cattgaaatgacagcaatgctgggcatgaagttgagtatcttttcggtaaatatagtcttcccagctcctgaaggacccgccaccccaaccaatattatt |
28071920 |
T |
|
| Q |
211 |
ccatcattcttttgggctaacaattggcatgcacgaatcacaatgacaaaccccttctcgaatgatagttgatcttgtattgaagaaatcccatagcgat |
310 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
28071919 |
ccatcattcttttgggctaacagttggcacgcacgaatcacaatgaaaaaccccttctcaaatgatagttgatcttgtattgaagaaatcacatagcgat |
28071820 |
T |
|
| Q |
311 |
tagagt-tttccttttaaccaaatgaacttgatcttttcaaagaccaagacgtttatgatgggaatcagaactagaagtatcgttcgccatcgaacaact |
409 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||| |
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| T |
28071819 |
tagagtctttccttttaaccaaatgaacttgatcttttaaaagaccaagacgtttatgatgggaatcagaattagaagtattgttcgccatcaaaccact |
28071720 |
T |
|
| Q |
410 |
cttaatttcctttaaaa--aacagaagatatatattaa--atggaaaaacaaataaacctacaac-aacatcaatgt |
481 |
Q |
| |
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||| ||||||| ||||| | ||||||||| | |||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
28071719 |
cttgatttcctctaaaaacagaagaagatat-tgttaactatggaaaaacaaataaacctgcaacaaacatcaatgt |
28071644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 45927200 - 45926984
Alignment:
| Q |
61 |
ttaccatcaaagttgccatcaacaattcgactagcatcattgtaactatccattgaaatgacaacaatgctaggcatgaagttgagtatcttttcggtaa |
160 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||| ||| ||||||| | ||| ||| |||| || ||||| || ||| | ||| || |||| |
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| T |
45927200 |
ttaccatcaaagtttccatcaatgattcgactagaatcattataattatccatagtaataacagcaatacttggcataaaactgaaaaccttatcagtaa |
45927101 |
T |
|
| Q |
161 |
atatagtctttccagctcccgaaggacccgccagcccaaccaatattattccatcattcttttgggctaacaattggcatgcacgaatcacaatgacaaa |
260 |
Q |
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| | ||| || |||||||| |||||||| || | || ||||| || ||||||||||| ||||| || || || || ||||||||||| ||||||| || |
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| T |
45927100 |
aaacagttttgccagctccagaaggaccagcaactcctaccaaaataattccatcattgttttgagccaataactgacatgcacgaataacaatgaagaa |
45927001 |
T |
|
| Q |
261 |
ccccttctcgaatgata |
277 |
Q |
| |
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|| ||||| ||||||| |
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| T |
45927000 |
tcctttctcaaatgata |
45926984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 29535120 - 29534935
Alignment:
| Q |
58 |
gatttaccatcaaagttgccatcaacaattcgactagcatcattgtaactatccattgaaatgacaacaatgctaggcatgaagttgagtatcttttcgg |
157 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||| |||||||||| | |||||||||||||| |||| |||||| |||||| ||||||||||| |
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| T |
29535120 |
gatttaccatcgaagtttccatcgacaattcgactagaatcattgtaattgtccattgaaatgactgcaatatcgggcatggagttgaatatcttttcgg |
29535021 |
T |
|
| Q |
158 |
taaatatagtctttccagctcccgaaggacccgccagcccaaccaatattattccatcattcttttgggctaacaattggcatgca |
243 |
Q |
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||| | |||||||||||| || ||||||||| | | ||| | ||||| ||||||||||| || ||| | ||||||||| ||||| |
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| T |
29535020 |
caaacacagtctttccagccccagaaggaccccctacccctattaatatcattccatcatttttctggaccaacaattggaatgca |
29534935 |
T |
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