View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_high_1 (Length: 1138)

Name: NF15659_high_1
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_high_1
NF15659_high_1
[»] chr2 (10 HSPs)
chr2 (596-1123)||(15430182-15430709)
chr2 (1-583)||(15430736-15431308)
chr2 (1-55)||(5958990-5959044)
chr2 (1-53)||(27004475-27004527)
chr2 (1-64)||(27969502-27969565)
chr2 (1-55)||(6974528-6974582)
chr2 (1-55)||(28107499-28107553)
chr2 (1-55)||(37060090-37060144)
chr2 (1-55)||(4382231-4382285)
chr2 (1-55)||(15070401-15070455)
[»] chr5 (5 HSPs)
chr5 (1-55)||(3729344-3729398)
chr5 (1-53)||(8159081-8159133)
chr5 (9-55)||(21020707-21020753)
chr5 (1-53)||(34766895-34766947)
chr5 (1-55)||(41929365-41929419)
[»] chr4 (7 HSPs)
chr4 (1-55)||(56100149-56100203)
chr4 (1-55)||(21555404-21555458)
chr4 (1-55)||(35929731-35929785)
chr4 (1-55)||(36609424-36609478)
chr4 (1-54)||(827854-827907)
chr4 (1-54)||(23249495-23249548)
chr4 (1-54)||(27733401-27733454)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-55)||(13067-13121)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-55)||(22206-22260)
[»] chr8 (8 HSPs)
chr8 (1-55)||(4623861-4623915)
chr8 (1-55)||(23403622-23403676)
chr8 (1-55)||(4234202-4234256)
chr8 (1-55)||(30204659-30204713)
chr8 (1-55)||(36470146-36470200)
chr8 (1-55)||(37630026-37630080)
chr8 (7-55)||(22798565-22798613)
chr8 (1-55)||(3001388-3001442)
[»] chr3 (8 HSPs)
chr3 (1-55)||(36404233-36404287)
chr3 (1-55)||(16353500-16353554)
chr3 (1-55)||(29360506-29360560)
chr3 (1-55)||(37115898-37115952)
chr3 (1-54)||(54883003-54883056)
chr3 (1-55)||(45603008-45603062)
chr3 (1-55)||(46487293-46487347)
chr3 (1-54)||(47599389-47599442)
[»] chr6 (4 HSPs)
chr6 (1-86)||(34710104-34710189)
chr6 (1-55)||(444545-444599)
chr6 (1-55)||(2814901-2814955)
chr6 (1-55)||(26394000-26394054)
[»] scaffold0302 (1 HSPs)
scaffold0302 (1-56)||(18514-18569)
[»] chr7 (2 HSPs)
chr7 (1-55)||(41326065-41326119)
chr7 (1-54)||(8163654-8163707)
[»] chr1 (6 HSPs)
chr1 (1-55)||(39001971-39002025)
chr1 (1-56)||(1585883-1585938)
chr1 (1-55)||(571671-571725)
chr1 (1-55)||(794937-794991)
chr1 (1-55)||(11121881-11121935)
chr1 (1-55)||(36290615-36290669)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-54)||(37414-37467)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-55)||(67896-67950)


Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 596 - 1123
Target Start/End: Complemental strand, 15430709 - 15430182
Alignment:
Q  596 gagaaaaggataaagaggatcactttgttgtagccctctttccaaattaaattcataagttggctcctcattaacgaggactgatgttgacgtaattaca 695  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  15430709 gagaaaaggataaagaggatcaatttgttgtagccctctttccaaattaaattcatcagttggctcctcattaacgaggactgatgttgtcgtaattaca 15430610  T
Q  696 ccttccatgacccacttacgccgtatggaaattcatttttctcacaactgcttccaaatattttcaatccaccagaatctctcttcctttaacaaaagcc 795  Q
    | || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15430609 catttcatgacccacttacgccgtctggatattcatttttctcacaactgcttccaaatattttcaatccaccagaatctgtcttcctttaacaaaagcc 15430510  T
Q  796 gaccatgattcataaatgacgctacctataacctttttaagtctattggctaacaccttagctaacactttatacaaacacccaatcaacaaaattggtc 895  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15430509 gaccatgattcataaatgacgctacctataacctttctaagtctattggctaacaccttagctaacactttatacaaacacccaatcaacaaaattggtc 15430410  T
Q  896 ggaagtccactaagccttgtgggttttctactttatgaattaacgctataaaagtgcaatcataactttcgcaagtttgccatttctatgaaaatcaaag 995  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  15430409 ggaagtccactaagccttgtgggttttctactttatgaattaacgctataaaagtgcaatcataactttctccaatttgccatttctatgaaaatcaaag 15430310  T
Q  996 atgaccctcataaactccgacttaaattctccctaaaaatctttgatgaagacaaaattgattccatcaaacccaagacttttaaaattttcacaatccc 1095  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  | |||||||||||||||||||||||||||    
T  15430309 atgaccctcataaactccgacttaaattctccctaaaaatctttgacgaagacaaaattgattccataaggctcaagacttttaaaattttcacaatccc 15430210  T
Q  1096 acattgcgtgtttaacctcctcttcact 1123  Q
    |||||| |||||||||||||||||||||    
T  15430209 acattgtgtgtttaacctcctcttcact 15430182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 15431308 - 15430736
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaactatttcaaacaagctctaagtatttgttttttgctttcaaccacta 100  Q
    ||||||||||||||||||| |||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  15431308 aaaacatgtaaaaggataactattacgggaagaggacatgtatatttcaaaaactatttcaaacaagctctaagtattt----tttgctttcaaccacta 15431213  T
Q  101 agaagataacgggtttactttgtcaaagagttttcatacaaatattttgttttgctggaaaaatacgaacttccatataactcaaacacaagccaaccaa 200  Q
    |||||||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15431212 agaagataacagatttactttgtcaaagagttgtcgtacaaatattttgttttgctggaaaaatacgaatttccatataactcaaacacaagccaaccaa 15431113  T
Q  201 atcaaatgaagcgaagaccgactttttatttatcacctcctcaattttaaaatggatgaaatgataaacaatatgcatcttgtctgctaaacaaatgccc 300  Q
    ||||||||||||||||||| |||||| ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15431112 atcaaatgaagcgaagaccaacttttcatttatcacc------attttaaaatggatgaaatgataaacaatatgcatcttgtctgctaaacagatgccc 15431019  T
Q  301 aaccactgcaaataagagaccagatgcgcccaaaaactccataacttacgaacagatgatctacactttactccttcccacaaccacttgcgcacaaaca 400  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  15431018 aaccactgcaaataagaggccagatgcgcccaaaaactccacaacttacgaacagatgatctacactttactcctgcccacaaccactcacgcacaaaca 15430919  T
Q  401 tgaattagcctgaataattccatgtcgaatcacattctctttcgttggtaagtgattttgtaacatccttcatgtgagcaagagaaccttcaaaggagcc 500  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15430918 tgaattagcctgaataattccatgtcgaatcagattctctttcgttggtaagtgattttgtaacatcctccatgtcagcaagagaaccttcaaaggagcc 15430819  T
Q  501 actttatttcaaactatgtcgaagatgaaagatctatcactcggcaccactaaagaaagcatgtgataaacccttcaattact 583  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||    
T  15430818 actttatttcaaactatgtcgaagatgaaagatctatcactcgataccacgaaagaaagcatgtgataaatccttcaattact 15430736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5959044 - 5958990
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| |||| || ||||||||||| |||||||||||||||    
T  5959044 aaaacatgtaaaaggataactattacgagaagaggacttgtatatttcaaaaact 5958990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27004527 - 27004475
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaa 53  Q
    ||||||| ||||||||||| ||||| | |||||||||||||||||||||||||    
T  27004527 aaaacatataaaaggataactattgtgagaagaggacttatatatttcaaaaa 27004475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27969565 - 27969502
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaactatttcaaac 64  Q
    ||||||| ||||||||||| ||||| | |||| | |||| ||||||||||||||||||||||||    
T  27969565 aaaacatataaaaggataactattgtgagaagtgaacttgtatatttcaaaaactatttcaaac 27969502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6974528 - 6974582
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| ||||| | |||||| ||||||||||||||||||||    
T  6974528 aaaacatgtaaaatgataactattgtgagaagagcacttatatatttcaaaaact 6974582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28107499 - 28107553
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | |||||||| || |||||||||||||||    
T  28107499 aaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaact 28107553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37060090 - 37060144
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | |||||||| || |||||||||||||||    
T  37060090 aaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaact 37060144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4382285 - 4382231
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| ||||| | |||||| |||| |||||||||||||||    
T  4382285 aaaacatgtaaaatgataactattgtgagaagagaacttgtatatttcaaaaact 4382231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15070401 - 15070455
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||| ||||||||||| ||||| | |||||||| || |||||||||||||||    
T  15070401 aaaacatataaaaggataactattgtgagaagaggatttgtatatttcaaaaact 15070455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3729344 - 3729398
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  3729344 aaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaact 3729398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8159081 - 8159133
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaa 53  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  8159081 aaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaa 8159133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 21020753 - 21020707
Alignment:
Q  9 taaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  21020753 taaaaggataactattgcgagaagaagacttatatatttcaaaaact 21020707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34766895 - 34766947
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaa 53  Q
    |||||||||||||| |||| ||||| | ||||||||||| |||||||||||||    
T  34766895 aaaacatgtaaaagaataactattgtgagaagaggacttgtatatttcaaaaa 34766947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41929419 - 41929365
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| |||||||  ||||| ||||  ||||||||||||||    
T  41929419 aaaacatgtaaaaggataactattgcgaaaagagaacttgcatatttcaaaaact 41929365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 56100149 - 56100203
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  56100149 aaaacatgtaaaaggataactattgcgagaagaggacttgtatatttcaaaaact 56100203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21555458 - 21555404
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||    
T  21555458 aaaacatgtaaaaggataactattgtgagaagaagacttatatatttcaaaaact 21555404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35929785 - 35929731
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||| ||||| ||||| ||||| | |||||||||||||||||||||||||||    
T  35929785 aaaacatataaaatgataactattgtgagaagaggacttatatatttcaaaaact 35929731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36609424 - 36609478
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | |||||||| || |||||||||||||||    
T  36609424 aaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaact 36609478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 827907 - 827854
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    ||||||||||||| ||||| ||||| | ||||||||||| ||||||||||||||    
T  827907 aaaacatgtaaaaagataactattgtgagaagaggacttgtatatttcaaaaac 827854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23249548 - 23249495
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    ||||||||||||||||||| ||||| | ||||||| ||| ||||||||||||||    
T  23249548 aaaacatgtaaaaggataactattgtgagaagagggcttgtatatttcaaaaac 23249495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27733454 - 27733401
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    ||||||||||||||||||| ||||| | ||||||| ||| ||||||||||||||    
T  27733454 aaaacatgtaaaaggataactattgtgagaagaggtcttgtatatttcaaaaac 27733401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13067 - 13121
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||    
T  13067 aaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaact 13121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22260 - 22206
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||    
T  22260 aaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaact 22206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4623861 - 4623915
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||    
T  4623861 aaaacatgtaaaaggataactattgtgagaagatgacttatatatttcaaaaact 4623915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23403676 - 23403622
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||    
T  23403676 aaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaact 23403622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4234256 - 4234202
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||| ||| ||||||| ||||| ||||| |||||||||||||||    
T  4234256 aaaacatgtaaaaggctaactattgcgagaagatgacttgtatatttcaaaaact 4234202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30204659 - 30204713
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||||    
T  30204659 aaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaact 30204713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36470146 - 36470200
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||||    
T  36470146 aaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaact 36470200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37630080 - 37630026
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||||    
T  37630080 aaaacatgtaaaaggctaactattgcgagaagagggcttatatatttaaaaaact 37630026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 22798613 - 22798565
Alignment:
Q  7 tgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| | ||||||||||| |||||||||||||||    
T  22798613 tgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaact 22798565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3001388 - 3001442
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| |||||  |||| | ||||||||||| |||||||||||||||    
T  3001388 aaaacatgtaaaaagataaccattgtgagaagaggacttgtatatttcaaaaact 3001442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36404233 - 36404287
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||    
T  36404233 aaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaact 36404287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16353500 - 16353554
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| |  |||||||||| |||||||||||||||    
T  16353500 aaaacatgtaaaaggataactattgtgaaaagaggacttgtatatttcaaaaact 16353554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29360560 - 29360506
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| || || | ||||||||||| |||||||||||||||    
T  29360560 aaaacatgtaaaaggataactactgtgagaagaggacttgtatatttcaaaaact 29360506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37115898 - 37115952
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||| ||||| ||||| ||||||| ||||| |||||||||||||||||||||    
T  37115898 aaaacatataaaatgataactattgcgagaagatgacttatatatttcaaaaact 37115952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54883003 - 54883056
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    |||||| |||||||||||| ||||| | ||||||||||| ||||||||||||||    
T  54883003 aaaacacgtaaaaggataaatattgtgagaagaggacttctatatttcaaaaac 54883056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45603062 - 45603008
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| |  |||| ||||| |||||||||||||||    
T  45603062 aaaacatgtaaaaggataactattgtgataagatgacttgtatatttcaaaaact 45603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46487347 - 46487293
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||| ||||| ||||| ||||| | ||||| |||||||||||||||||||||    
T  46487347 aaaacatataaaatgataactattgtgagaagaagacttatatatttcaaaaact 46487293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47599442 - 47599389
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    ||||||||||||||||||| ||||| | |||||||| || ||||||| ||||||    
T  47599442 aaaacatgtaaaaggataactattgtgagaagaggatttgtatattttaaaaac 47599389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34710189 - 34710104
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaactatttcaaacaagctctaagtatttgtttttt 86  Q
    ||||||| |||||| |||| || || | |||||| |||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||    
T  34710189 aaaacatataaaagaataactactgtgagaagagaacttgtatatttcaaaaactatttcaaacatgctcttagtttttttttttt 34710104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 444599 - 444545
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||| ||||||| ||||| | ||||||||||| |||||||||||||||    
T  444599 aaaacatgtaataggataactattgtgagaagaggacttgtatatttcaaaaact 444545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2814901 - 2814955
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| ||||| | ||||||||||| |||||||||||||||    
T  2814901 aaaacatgtaaaatgataactattgtgagaagaggacttgtatatttcaaaaact 2814955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26394000 - 26394054
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| ||||||| ||||| || || |||||||||||||||    
T  26394000 aaaacatgtaaaatgataaatattgcgagaagaagatttttatatttcaaaaact 26394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18514 - 18569
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaacta 56  Q
    ||||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||    
T  18514 aaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaacta 18569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41326119 - 41326065
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||| || ||||||||||||||||||    
T  41326119 aaaacatgtaaaaggataactattgtgagaagaagatttatatatttcaaaaact 41326065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8163654 - 8163707
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    ||||||||||||| ||||| ||||| | |||||| |||| ||||||||||||||    
T  8163654 aaaacatgtaaaaagataactattgtgagaagagaacttgtatatttcaaaaac 8163707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39002025 - 39001971
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||||   |||||||||| |||||||||||||||    
T  39002025 aaaacatgtaaaaggataactattgcaaaaagaggacttgtatatttcaaaaact 39001971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1585938 - 1585883
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaacta 56  Q
    ||||||||||||||||||| |||||   ||||| ||||| ||||||||||||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagacttgtatatttcaaaaacta 1585883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 571725 - 571671
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| ||||  | ||||||||| |||||||||||||||||    
T  571725 aaaacatgtaaaatgataactattatgagaagaggacgtatatatttcaaaaact 571671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 794991 - 794937
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| ||||| | ||||| ||| | |||||||||||||||    
T  794991 aaaacatgtaaaaggataactattgtgagaagaagacctgtatatttcaaaaact 794937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11121935 - 11121881
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| ||||| | ||||| ||||| |||||||||||||||    
T  11121935 aaaacatgtaaaatgataactattgtgcgaagatgacttgtatatttcaaaaact 11121881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36290669 - 36290615
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||| ||||| |||||   ||||||||||| |||||||||||||||    
T  36290669 aaaacatgtaaaatgataactattgtcagaagaggacttgtatatttcaaaaact 36290615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37414 - 37467
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaac 54  Q
    |||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||||    
T  37414 aaaatatgtaaaatgataactattgcgagaagaggacttgtatatttcaaaaac 37467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 67950 - 67896
Alignment:
Q  1 aaaacatgtaaaaggataattattgcgtgaagaggacttatatatttcaaaaact 55  Q
    ||||||||||||||||||| |||||   ||||||||||| ||||||| |||||||    
T  67950 aaaacatgtaaaaggataactattgttagaagaggacttgtatattttaaaaact 67896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University