View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_11 (Length: 503)
Name: NF15659_high_11
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 5 - 503
Target Start/End: Original strand, 29787267 - 29787765
Alignment:
| Q |
5 |
tcgagtgagatgaactagattttttcttggttgactttttactcattgaaaataagaaacttgcaactttccctttaaatgatgatttcttactcttgga |
104 |
Q |
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| T |
29787267 |
tcgaatgagatgaactagattttttcttggttgactttttactcattgaaaataagaaacttgcaactttccctttaaatgatgatttcttactcttgga |
29787366 |
T |
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| Q |
105 |
ctttgccaccaccttggagccatgttctttgtcaacggcatcaatgccgaggctaggttcatagactgctgaagatgcagggtcaggattcaacccacaa |
204 |
Q |
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| T |
29787367 |
ctttgccaccaccttggagccatgttctttgtcaacggcatcaatgccgaggctaggttcatagactgttgaagatgcagggtcaggattcaacccacaa |
29787466 |
T |
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| Q |
205 |
tcgttttgaggagaatcatcaatgctaattttttcattgaaagattcagtgcaagaaacagattttctttgttcttcttggtgtttattagtactctcaa |
304 |
Q |
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| T |
29787467 |
tcgttttgaggagaatcattaatgctaattttttcattgaaagattcagtgcaagaaacagattttctttcttcttcttggtgtttattagtactctcaa |
29787566 |
T |
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| Q |
305 |
ccacagatgttgcagatttctttacaagggaaagagaaagcatttcacccaaagtagagtttctcgacacatgcctttgttcttgatggccttttccgtt |
404 |
Q |
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| T |
29787567 |
tcacagatgttgcagatttctttacaagggaaagagaaagcatttcacccaaagtagagtttctcgacacatgcctttgttcttgatggccttttccgtt |
29787666 |
T |
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| Q |
405 |
agatgccatgacgttccatctttcagaaagtcgtttctttgcctctatgcacaccgaggactcgggagaacacgctgtaggtcctaaagcttgtgtaga |
503 |
Q |
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| T |
29787667 |
agatgccatgacgttccatctttcagaaagtcgtttctttgcctctatgcacaccgaggactcgggagaacacgttgtacgtcctaaagattgtgtaga |
29787765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 39873524 - 39873422
Alignment:
| Q |
21 |
agattttttcttggttgactttttactcattgaaaataagaaacttgcaactttccctttaaatgatgatttcttactcttggactttgccaccaccttg |
120 |
Q |
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| T |
39873524 |
agatttttccctgattgatttcttattccttgagaataagaaactcgcaactttccctttaaatgatgatttcatactctttgactttgtcagctccttg |
39873425 |
T |
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| Q |
121 |
gag |
123 |
Q |
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| T |
39873424 |
gag |
39873422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 476
Target Start/End: Complemental strand, 39873202 - 39873063
Alignment:
| Q |
334 |
gaaagagaaagcatttcacccaaagtagagtttctcgacacatgcctttgttcttgatggccttttccgttagatgccatgacgttccatctttcagaaa |
433 |
Q |
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| T |
39873202 |
gaaagagcaagcatctcgcccaaagtagagcttctccgcatatgtctttgttcttgaaaacccttc---ttagatgccatcatggcccatctttcagaaa |
39873106 |
T |
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| Q |
434 |
gtcgtttctttgcctctatgcacaccgaggactcgggagaaca |
476 |
Q |
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| T |
39873105 |
gtcgtttcttggcctctctgcatactgacgactcaggagaaca |
39873063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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