View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_14 (Length: 447)
Name: NF15659_high_14
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 30729975 - 30729558
Alignment:
| Q |
11 |
gtgagatgaataatatgtttgagtagtaccttttgaccctcttggggtcagtaatttttggacttgaaaaagttgttgtatttccattattgtcatcttc |
110 |
Q |
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| T |
30729975 |
gtgacatgaataatatgtttgagcagtaccttttgaccctcttggggtcagtaatttttggacttgaaaaagttgttgtatttccattattgtcatcttc |
30729876 |
T |
|
| Q |
111 |
atcattcacaactcctccattttcctgtttgcattcaccaatttcatcctcatcagattcatgcttcaattgtttctgttgcatcttttcctcctcatct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30729875 |
atcattcacaactcctccattttcctgtttgcattcaccaatttcatcctcatcagattcatgcttcaattgtttctgttgcatcttttcctcctcatct |
30729776 |
T |
|
| Q |
211 |
tcctctttctcatcattgatgctgttatgatcagaaggacttgaagggttagagttagatgacaatgtagctggtggtggcatcatggtattattccttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30729775 |
tcctctttctcatcattgatgctgttatgatcagaaggagttgaagggttagagttagatgacaatgtagctggtggtggcatcatggtattattccttg |
30729676 |
T |
|
| Q |
311 |
aaacctcgtccacactaaacatggacatcaattgttcatcatcaaacctttcaaactcattgtctccatccctacggcgacaatgctccatcatcgatgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30729675 |
aaacctcgtccacactaaacatggacatcaattgttcatcatcaaacctttcaaactcattgtctccatccctacggcgacaatgctccatcatcgatgc |
30729576 |
T |
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| Q |
411 |
ttctatgaaggtcactga |
428 |
Q |
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|||||||||||||||||| |
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| T |
30729575 |
ttctatgaaggtcactga |
30729558 |
T |
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