View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_15 (Length: 444)
Name: NF15659_high_15
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 430
Target Start/End: Original strand, 34584848 - 34585268
Alignment:
| Q |
10 |
agatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatca |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584848 |
agatgcaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatca |
34584947 |
T |
|
| Q |
110 |
gatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacc |
209 |
Q |
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|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584948 |
gatcaatatttttcaacaatttttggcatcatactcagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacc |
34585047 |
T |
|
| Q |
210 |
tcgacgcattttttacctaggtttatgttgtgacttgtgagtactgtaattgttttcaatgaacataaattgtatgaggtagcgaatgatgcagtaggga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34585048 |
tcgacgcattttttacctaggtttatgttgtgacttgtgagtactgtaattgttttcaatgaacataaattgtatgaggtagcgaatgatgcagtaggga |
34585147 |
T |
|
| Q |
310 |
gtataagaacggttgcttgattattagtagaaaaaacaagcatcaatttgaacatgaatgtagctatactaatatttgtgtctgatttttggtggagtgg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34585148 |
gtataagaacggttgcttgattattagtagaaaaaacaagcatcaatttgaacatgaatgtagctatactaatatttgtgtctgatttttggtggagtgg |
34585247 |
T |
|
| Q |
410 |
gagattgtagtagagaaactt |
430 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34585248 |
gagattgtagtagagaaactt |
34585268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 34586493 - 34586641
Alignment:
| Q |
52 |
ctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaaga |
151 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||| |||| ||||| |||| |||| ||| | ||| || |||| ||| |||||||| |
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| T |
34586493 |
ctaattaatattgtgaatggatatgaaaatgtgttctcaactgaatcgatagttatcaaatcattatgt----acagttgttggtatcctactaaga--- |
34586585 |
T |
|
| Q |
152 |
tggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgata |
207 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
34586586 |
tgtaagaaaattacttcatgagcatgagtcaacattgttacaatacaagcatgata |
34586641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 428
Target Start/End: Original strand, 34586684 - 34586819
Alignment:
| Q |
292 |
cgaatgatgcagtagggagtataagaacggttgcttgattattagtagaaaaaacaagcatcaatttgaacatgaatgt-agctatactaatatttgtgt |
390 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| ||||||| ||||||||||||||||| ||||| ||||||||||| |||||| |||||||||||| |
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| T |
34586684 |
cgaatgatgcagtagggaatataaaaactgttgattgatta---gtagaaaaaacaagcattaatttaaacatgaatgtaagctatgttaatatttgtgt |
34586780 |
T |
|
| Q |
391 |
ctgatttttggtggagt-gggagattgtagtagagaaac |
428 |
Q |
| |
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||| |||| |||||||| |||| |||||||||||||||| |
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| T |
34586781 |
ctggttttcggtggagtggggacattgtagtagagaaac |
34586819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 34582916 - 34583022
Alignment:
| Q |
69 |
tggatatgaaaatttgttttcaacttaatcaatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttc |
168 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||| |||||||||| ||| |
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| T |
34582916 |
tggatatgaaaatgtgttctcaactaaatcaatagttatcagatcaatatttttgtacaaattttgtcatcatact---aagatgtaagaaaattaattc |
34583012 |
T |
|
| Q |
169 |
atgagcatga |
178 |
Q |
| |
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| |||||||| |
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|
| T |
34583013 |
acgagcatga |
34583022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 27016162 - 27015894
Alignment:
| Q |
11 |
gatgaaaatgttgttcttgatcttgactttcaataatctacctaattaatattgtgaatggatatgaaaatttgttttcaacttaatcaatagtaatcag |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| | |
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| T |
27016162 |
gatgcaaatgttgttcttgatcttgacttgcaataatcaacccaattaatgttgtgaatg--tatgaaaatctgttttcaacttaatcaatagtaattaa |
27016065 |
T |
|
| Q |
111 |
atcaatatttttctacaatttttggaatcatactaagaagatggaagaaaattacttcatgagcatgagtcaacatcgttacagtacaagcatgatacct |
210 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27016064 |
atcaatatttttgtacaatttt-ggcatcatactaagaagatggaaggaaattacttcatgagcaattgtcaacatcgttacagtacaagcatgatacct |
27015966 |
T |
|
| Q |
211 |
cgacgcattttttacctaggtttatgttgtgacttgtgagtactgtaattgttttcaatgaacataaattgt |
282 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27015965 |
tgatgcattttttacttaggtttatgttgtgacttgtgagtactgtaattgttttcaatgaacataaattgt |
27015894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 288 - 416
Target Start/End: Complemental strand, 27014888 - 27014761
Alignment:
| Q |
288 |
gtagcgaatgatgcagtagggagtataagaacggttgcttgattattagtagaaaaaacaagcatcaatttgaacatgaatgtagctatactaatatttg |
387 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||| |||||||||||||| |
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|
| T |
27014888 |
gtagtgaatgatgcagtagggagtttaagaacggttgcttgattatcagtagaaaaaacaagcatcaatctaaacatg-atgtagttatactaatatttg |
27014790 |
T |
|
| Q |
388 |
tgtctgatttttggtggagtgggagattg |
416 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |
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| T |
27014789 |
tgtctggtttttggtggagtggtagattg |
27014761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 388
Target Start/End: Complemental strand, 5327767 - 5327609
Alignment:
| Q |
243 |
cttgtgagtactgtaattgttttcaatgaacataaattgtatgagg------------tagcgaatgatgcagtagggagtataagaacggttgcttgat |
330 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||| |||||||||||||||||| |
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|
| T |
5327767 |
cttgtgagtagtgtaattgttttcaatgaacataaattgtatgaggaatcaagtaaagtaggaaatgatgcagcaggaagtttaagaacggttgcttgat |
5327668 |
T |
|
| Q |
331 |
tattagtagaaaaaacaagcatcaa-tttgaacatgaatgtagctatactaatatttgt |
388 |
Q |
| |
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||| ||||||||||||||||||||| ||| ||||||| |||||| ||||||| |||||| |
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|
| T |
5327667 |
tatcagtagaaaaaacaagcatcaattttaaacatgattgtagccatactaacatttgt |
5327609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 5327851 - 5327807
Alignment:
| Q |
179 |
gtcaacatcgttacagtacaagcatgatacctcgacgcatttttt |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
5327851 |
gtcaacatcgttatagtacaagcatgataccttgatgcatttttt |
5327807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 51201168 - 51201289
Alignment:
| Q |
55 |
attaatattgtgaatggatatgaaaatttgttttcaacttaatc-aatagtaatcagatcaatatttttctacaatttttggaatcatactaagaagatg |
153 |
Q |
| |
|
||||||||||| |||| || ||||||| ||||||||| |||||| |||||||||||||| ||||||||| | |||||||||| |||||||| |||||| |
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|
| T |
51201168 |
attaatattgtaaatgaatctgaaaatgtgttttcaaattaatccaatagtaatcagataaatatttttgttcaatttttggcatcatact---aagatg |
51201264 |
T |
|
| Q |
154 |
gaagaaaattacttcatgagcatga |
178 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
51201265 |
taagaaaattacttcatgatcatga |
51201289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 51201411 - 51201447
Alignment:
| Q |
291 |
gcgaatgatgcagtagggagtataagaacggttgctt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51201411 |
gcgaatgatgcagtagggagtataagaacagttgctt |
51201447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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