View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_20 (Length: 400)
Name: NF15659_high_20
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 34304826 - 34305213
Alignment:
| Q |
1 |
aatattttagcactttgatggtgaatttaggttttgacaatctgaaaaatgctgcattagggggtcattatgaagcgaaatatgtatattctatgctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
34304826 |
aatattttagcactttgatggtgaatttaggttttgacaatctgaaaaatgctgcattagggggtcatcatgaagctaaatatgtatattctatgctttt |
34304925 |
T |
|
| Q |
101 |
gatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcaggaag |
200 |
Q |
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| T |
34304926 |
gatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcaggaag |
34305025 |
T |
|
| Q |
201 |
agagtgaagtcatttattaaaagcatgtggttgagaaattcggtggtggttcaaaatcaagaattgtctttgtgttgttctagcacatgtcagagcggtg |
300 |
Q |
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| T |
34305026 |
agagtgcagtcatttattaaaagcatgtggttgagaaattcggtggtggttcaaaatcaagaattgtctttgtgttgttctagcacatgtcagagcggtg |
34305125 |
T |
|
| Q |
301 |
gtggaacagaaaaggtggtgaaaaaacattcaccatggaggcaaattgatgaatttgataatgatgttagtttttcatgcaaatattg |
388 |
Q |
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| T |
34305126 |
gtgggacagaaaaggtggtgaaaaaacattcactatggaggcaaattgatgaatttgataatgatgttagtttttcatgcaaatattg |
34305213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 31001401 - 31001235
Alignment:
| Q |
14 |
tttgatggtgaatttaggttttgacaatctgaaaaatgctgcattagggggtcattatgaagcgaaatatgtatattctatgcttttgatggctaatgct |
113 |
Q |
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| T |
31001401 |
tttgatggtgaatttggattttgagaatctgaaaaaggctttattagagggtcatcatgaagctaaatatgtttattctatgcttttgatggctaattct |
31001302 |
T |
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| Q |
114 |
gaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcatta |
180 |
Q |
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| | ||||||| || |||||| || ||||||||||||| | || |||||||| | ||||||||| |
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| T |
31001301 |
aacgacggagaaggaataaaattgggctttgatctctttgataaattgaaaaataaaacgtgcatta |
31001235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 31001223 - 31001155
Alignment:
| Q |
206 |
gaagtcatttattaaaagcatgtggttgagaaattcggtggtggttcaaaatcaagaattgtctttgtg |
274 |
Q |
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| T |
31001223 |
gaagtcttttattcaaagcatgtgagtgaaaaatcatgtggttgttcaaaatcaagaattgtctttgtg |
31001155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 30997396 - 30997354
Alignment:
| Q |
62 |
gggtcattatgaagcgaaatatgtatattctatgcttttgatg |
104 |
Q |
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| T |
30997396 |
gggtcatcatgaagtgaaatatgtttattctatgcttttgatg |
30997354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 14572980 - 14573251
Alignment:
| Q |
24 |
aatttaggttttgacaatctgaaaaatgctgcattagggggtcattatgaagcgaaatatgtatattctatgcttttgatggctaatgctgaaaatggag |
123 |
Q |
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|||||||||||||| ||| |||| || |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||| |||| | | || |
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| T |
14572980 |
aatttaggttttgagaatttgaagaaggctgcattagagggtcatcatgatgcgaaatatgtttattctatgcttttgatggctaattgtgaagacgaag |
14573079 |
T |
|
| Q |
124 |
aagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcaggaagagagtgaagtcatttattaaaag |
223 |
Q |
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| T |
14573080 |
aaggaagaaaacttggttatgatctctttggtgaattgaaaaattccacatgcattagt------attacaaggaagagggtgaagtcttttattcaaag |
14573173 |
T |
|
| Q |
224 |
catgtggttgagaaattcggtggtggttcaaaatcaagaattgtctttgtgttgttctagcacatgtcagagcggtgg |
301 |
Q |
| |
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||||||| ||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
14573174 |
catgtgggtgaaaaatcatgtggtggttcaaaatcaagcagtgtctttgtgttgttctagcacatgtcagagccgtgg |
14573251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 49666209 - 49666497
Alignment:
| Q |
1 |
aatattttagcactttgatggtgaatttaggttttgacaatctgaaaaatgctgcattagggggtcattatgaagcgaaatatgtatattctatgctttt |
100 |
Q |
| |
|
||||||| || |||||||||||| |||||||||| | ||| |||| || ||||| ||| ||||||| ||||||| |||||||| |||||||||||||| |
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| T |
49666209 |
aatatttcagtactttgatggtggatttaggtttgaagaatttgaagaaggctgcgctagagggtcatcatgaagccaaatatgtttattctatgctttt |
49666308 |
T |
|
| Q |
101 |
gatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcaggaag |
200 |
Q |
| |
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|||||||||| ||| ||| ||||| ||||||| | |||||||||||||||||||| |||| ||||| | |||||| | ||||| |||| || ||| |
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| T |
49666309 |
gatggctaattgtgatgatgaagaaggaagaaaacttgggtttgatctctttggtgagttgaagaattccacaggcattactattgtgggttgtagaaag |
49666408 |
T |
|
| Q |
201 |
agagtgaagtcatttattaaaagcatgtggttgagaaattcggtggtggttcaaaatcaagaattgtctttgtgttgttctagcacatg |
289 |
Q |
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|| |||||||| |||||| ||||||||||| ||| ||| ||||||| ||||||||||| | | |||||||||| |||||||||||| |
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| T |
49666409 |
agggtgaagtcttttattcaaagcatgtgggtgaagaatgttgtggtggctcaaaatcaaggactctctttgtgttcttctagcacatg |
49666497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 50936179 - 50936027
Alignment:
| Q |
1 |
aatattttagcactttgatggtgaatttaggttttgacaatctgaaaaatgctgcattagggggtcattatgaagcgaaatatgtatattctatgctttt |
100 |
Q |
| |
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||||||| || |||||||||||| |||||||||| | ||| |||| || ||||| ||| ||||||| ||||||| |||||||| |||||||||||||| |
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| T |
50936179 |
aatatttcagtactttgatggtggatttaggtttgaagaatttgaagaagactgcactagagggtcatcatgaagccaaatatgtttattctatgctttt |
50936080 |
T |
|
| Q |
101 |
gatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttg |
153 |
Q |
| |
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|||||||||| ||| ||| |||| ||||||| | |||||||||||||||| |
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| T |
50936079 |
gatggctaattgtgatgatgatgaaggaagaaaacttgggtttgatctctttg |
50936027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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