View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_23 (Length: 380)
Name: NF15659_high_23
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_23 |
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| [»] scaffold0250 (1 HSPs) |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: scaffold0250 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 4513 - 4568
Alignment:
| Q |
159 |
ctccggagatggagactgcaaaccaagatttagcaaaggttaaaagaacagaagac |
214 |
Q |
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| T |
4513 |
ctccggagatggagactgcaaaccaagatttagcaaagcttaaaagagcataagac |
4568 |
T |
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Target: scaffold0438 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 304
Target Start/End: Complemental strand, 13490 - 13314
Alignment:
| Q |
126 |
ttaattaattaaggaaattacagtcgatatattctccggagatggagactgcaaaccaagatttagcaaaggttaaaagaacagaag-acaagaaattaa |
224 |
Q |
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| T |
13490 |
ttaattaatcaaggaaatcatagtcaataaaatctcacaagatggagactgcagaccgaattttagtagaggttaaaaaaacataggcaaaacaaatt-a |
13392 |
T |
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| Q |
225 |
attaattaatgtggttgcaacacatgaatgaataaagaaacggattgttgaatgatcatacccgtagtcatggcatctac |
304 |
Q |
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| T |
13391 |
attaattaatgt--atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatggcatctac |
13314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 304
Target Start/End: Complemental strand, 26343329 - 26343153
Alignment:
| Q |
126 |
ttaattaattaaggaaattacagtcgatatattctccggagatggagactgcaaaccaagatttagcaaaggttaaaagaacagaag-acaagaaattaa |
224 |
Q |
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| T |
26343329 |
ttaattaatcaaggaaatcatagtcaataaaatctcacaagatggagactgcagaccgaattttagtagaggttaaaaaaacataggcaaaacaaatt-a |
26343231 |
T |
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| Q |
225 |
attaattaatgtggttgcaacacatgaatgaataaagaaacggattgttgaatgatcatacccgtagtcatggcatctac |
304 |
Q |
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| T |
26343230 |
attaattaatgt--atgcaacatatgaatgaatagagaaacagattgaagaatgatcatacttgtagtcatggcatctac |
26343153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 26295972 - 26295835
Alignment:
| Q |
165 |
agatggagactgcaaaccaagatttagcaaaggttaaaagaacagaag-acaagaaattaaattaattaatgtggttgcaacacatgaatgaataaagaa |
263 |
Q |
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| T |
26295972 |
agatggagactgcagaccgaattttagtagaggttaaaaaaacataggcaaaacaaatt-aattaattaatgt--atgcaacatatgaatgaatagagaa |
26295876 |
T |
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| Q |
264 |
acggattgttgaatgatcatacccgtagtcatggcatctac |
304 |
Q |
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| T |
26295875 |
acagattgaagaatgatcatacttgtagtcatggcatctac |
26295835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 26309229 - 26309092
Alignment:
| Q |
165 |
agatggagactgcaaaccaagatttagcaaaggttaaaagaacagaag-acaagaaattaaattaattaatgtggttgcaacacatgaatgaataaagaa |
263 |
Q |
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| T |
26309229 |
agatggagactgcagaccgaattttagtagaggttaaaaaaacataggcaaaacaaatt-aattaattaatgt--atgcaacatatgaatgaatagagaa |
26309133 |
T |
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| Q |
264 |
acggattgttgaatgatcatacccgtagtcatggcatctac |
304 |
Q |
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| T |
26309132 |
acagattgaagaatgatcatacttgtagtcatggcatctac |
26309092 |
T |
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