View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_26 (Length: 360)
Name: NF15659_high_26
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 22923263 - 22922954
Alignment:
| Q |
20 |
gacattggcagagatgatttattagggtgggg-tgagggtggcgaggcttggatgtggcgtcgtagattgttggaatgggaggagggccaggtaaaggag |
118 |
Q |
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| T |
22923263 |
gacattggcagagattatttattaaggtgggggtgagggtggcgaggcttggacgtggcgtcgtagattgttggtatgggaagaggaccagttaaaggag |
22923164 |
T |
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| Q |
119 |
tgtaggattttacttgatgatgtgtcattacaagttgatat----ttaggatatttggcgttagaaactcga--cgaagacatgatatttggtgcatgga |
212 |
Q |
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| T |
22923163 |
tggaggattttacttgatgatgtgtcattacaagttgatatatatttaggatatttggcattggaaactcgattcgaagacatgatatttggtgcatcga |
22923064 |
T |
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| Q |
213 |
gtgtaatgttttcttaccagtcaagaaccagagcactttacatctatgtcagaatatacttgacataaggatgttcctttaaatgtatctttgtttgctt |
312 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22923063 |
gtgtaaagttttcttaccagtcaagaaccagaacactttacatctatgtcagaacatacttgacataaggatgttcctttaaatgtatctttgtttgctt |
22922964 |
T |
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| Q |
313 |
gactattatt |
322 |
Q |
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|| ||||||| |
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| T |
22922963 |
gattattatt |
22922954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 120 - 332
Target Start/End: Original strand, 22923854 - 22924068
Alignment:
| Q |
120 |
gtaggattttacttgatgatgtgtcattacaagttgatatttaggatatttggcgttagaaactcgac--gaagacatgatatttggtgcatggagtgta |
217 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||| | ||||||||| |
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| T |
22923854 |
gtaggattttacttcatgatgtgtcattgcaagttgatatttaggatatttggtgttggaaactcgatttgacgacatgatatttggtacgtggagtgta |
22923953 |
T |
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| Q |
218 |
atgttttcttaccagtcaagaaccagagcactttacatctatgtcagaatatacttgacataaggatgttcctttaaatgtatctttgtttgcttgacta |
317 |
Q |
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||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22923954 |
cagttttcttaccagccaagaacgagagcactttacatcgatgtcagaatatacttgacataaggatgttcctttaaatgtatctttgtttgcttgacta |
22924053 |
T |
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| Q |
318 |
ttatttcgtaatagg |
332 |
Q |
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||||| || |||||| |
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| T |
22924054 |
ttattccgcaatagg |
22924068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 11527727 - 11527784
Alignment:
| Q |
47 |
tggggtgagggtggcgaggcttggatgtggcgtcgtagattgttggaatgggaggagg |
104 |
Q |
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| T |
11527727 |
tggggtgagggtggcgaggcatgaaagtggcatcgtatgttgttggtatgggaggagg |
11527784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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