View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_28 (Length: 355)
Name: NF15659_high_28
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 34932956 - 34932643
Alignment:
| Q |
16 |
atattatctgcgaagccgactctctcccaaatcttcaacatctatagcgcaaagatgagatactcagcgggatgcccatcgagatacgcacacggaataa |
115 |
Q |
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| T |
34932956 |
atattatctgcgaagccgactctctcccaaatcttcaacatctatagtgcaaagatgagatactcagcgggatgcccatcgagatacacacacggaataa |
34932857 |
T |
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| Q |
116 |
ctcctgcgcacatgttcgacaacattcctgtgtttaaagccgaggcaagcttttctggggcctgtagcaaatgctttcttttaattctagtttcactatt |
215 |
Q |
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| T |
34932856 |
ctcctgcgcacatgttcgacaaccttcctgtgtttaaagccgaggcaagcttttctggggcctgtagcaaatgctttcttttgattctagtttcacaatt |
34932757 |
T |
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| Q |
216 |
ttagtttctttgtgcgtattctagttctttaatattacttactctttaaacccacaggatcccgaactggtatcgcttcagcaatggcttgatgaaatag |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||| |||||| |
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| T |
34932756 |
ttagattctttgtgcgtattctagttctttaatattacttactctttaaacccacaggatctcgaactggcatcgcttcagaaaatgcttgataaaatag |
34932657 |
T |
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| Q |
316 |
aaagtgagaagaat |
329 |
Q |
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|| ||||||||||| |
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| T |
34932656 |
aatgtgagaagaat |
34932643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 38648688 - 38648614
Alignment:
| Q |
193 |
cttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactctttaaacc |
267 |
Q |
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||||| |||| |||||||| |||||||||||||||| | |||| | ||||||||||||| ||| ||| |||||| |
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| T |
38648688 |
cttttgattcaagtttcacaattttagtttctttgttcatatttgaattctttaatattaattaatctataaacc |
38648614 |
T |
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