View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15659_high_31 (Length: 340)
Name: NF15659_high_31
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 323
Target Start/End: Original strand, 30509597 - 30509918
Alignment:
| Q |
2 |
gagaacaacattgataaatttatttctcatgatgcaagtacataagacaaaggtaaacattgtgaccgttcaaatcctagtacctcgaaattttaagtat |
101 |
Q |
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| T |
30509597 |
gagaacaacattgataaatttatttctcatgatgcaagtacataagacaaaggtaaacattgtgaccgttcaaatcctagtacctcgaaattttaagtat |
30509696 |
T |
|
| Q |
102 |
tatgatgtatttttatcaataaacttcttccattgatctaaatataagatttaaattaacacacttgcatacaagatcaaacaactttaaagttgttgta |
201 |
Q |
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| T |
30509697 |
tatgatgtatttttatcaataaacttcttccattgatctaaatataagatttaaattaacacacttgcatacaagatcaaacaactttaaagttgttgta |
30509796 |
T |
|
| Q |
202 |
ctaatccagacgaaccgatcgcgtattgtggtatagagataaacaatgtgtaacgttacaagatatcagtaacatggatcacattcacatgtactaactt |
301 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30509797 |
ctaatccagacgaactgatcgcgtattgtggtatagagataaacaatgtgtaacgttacaagatatcagtaacatggatcacattcacatgtactaactt |
30509896 |
T |
|
| Q |
302 |
ttataagcaacacatgttattt |
323 |
Q |
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|||||||||||||||||||||| |
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| T |
30509897 |
ttataagcaacacatgttattt |
30509918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 24709670 - 24709608
Alignment:
| Q |
22 |
tatttctcatgatgcaagtacataagacaaaggtaaacattgtgaccgttcaaatcctagtac |
84 |
Q |
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| T |
24709670 |
tatttctcatgatacaagtacgtaagggaaaggtaaacaatgtgatcgttcaaatcctagtac |
24709608 |
T |
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