View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15659_high_33 (Length: 332)

Name: NF15659_high_33
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15659_high_33
NF15659_high_33
[»] chr8 (2 HSPs)
chr8 (18-255)||(11402055-11402292)
chr8 (48-143)||(11403127-11403222)
[»] chr2 (5 HSPs)
chr2 (253-324)||(20670796-20670867)
chr2 (27-148)||(42300562-42300683)
chr2 (27-148)||(42913325-42913446)
chr2 (181-255)||(42913497-42913571)
chr2 (181-255)||(42300437-42300511)
[»] chr4 (5 HSPs)
chr4 (27-148)||(27730425-27730546)
chr4 (27-148)||(45965976-45966097)
chr4 (181-255)||(27730597-27730671)
chr4 (181-255)||(45965851-45965925)
chr4 (181-247)||(24146599-24146665)
[»] chr6 (2 HSPs)
chr6 (181-255)||(29303584-29303658)
chr6 (27-148)||(29303709-29303830)
[»] chr5 (4 HSPs)
chr5 (181-255)||(12529384-12529458)
chr5 (181-255)||(35841564-35841638)
chr5 (27-148)||(12529212-12529333)
chr5 (27-148)||(35841689-35841810)
[»] chr1 (3 HSPs)
chr1 (181-255)||(29282638-29282712)
chr1 (181-255)||(49220633-49220707)
chr1 (27-148)||(29282466-29282587)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 11402292 - 11402055
Alignment:
Q  18 acttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402292 acttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttg 11402193  T
Q  118 ttatccataatattttctccatacacgctcaaattttgtaacgggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402192 ttatccataatattttctccatacacgctcaaattttgtaacaggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacaca 11402093  T
Q  218 gagattgcagtttttatttcggagttttctctgctcct 255  Q
    |||||||||||||||||||||||||||||||| |||||    
T  11402092 gagattgcagtttttatttcggagttttctctactcct 11402055  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
Q  48 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 143  Q
    ||||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11403127 ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 20670796 - 20670867
Alignment:
Q  253 cctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaatttcacccttgatgatgtc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20670796 cctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaatttcacccttgatgatgtc 20670867  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 42300683 - 42300562
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||  ||||||||  ||||| ||||||||||||||||||||||  |||||||  |||  | |||||| ||||||||||||||||| ||||   |    
T  42300683 caaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttga 42300584  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  42300583 atatcttctccatacactctca 42300562  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 42913325 - 42913446
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  42913325 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 42913424  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  42913425 atatcttctccatacactctca 42913446  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 42913497 - 42913571
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| ||||||| |||||    
T  42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcct 42913571  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 42300511 - 42300437
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || ||||||| |||||    
T  42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcct 42300437  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 27730425 - 27730546
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  27730425 caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 27730524  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  27730525 atatcttctccatacactctca 27730546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 45966097 - 45965976
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    ||||||||| ||||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  45966097 caaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 45965998  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  45965997 atatcttctccatacactctca 45965976  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 27730597 - 27730671
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 27730671  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 45965925 - 45965851
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 45965851  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 24146665 - 24146599
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttct 247  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||    
T  24146665 gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttct 24146599  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 29303658 - 29303584
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29303584  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 29303830 - 29303709
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  29303830 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29303731  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  29303730 atatcttctccatacactctca 29303709  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 12529384 - 12529458
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 12529458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 35841638 - 35841564
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 35841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 12529212 - 12529333
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  12529212 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 12529311  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  12529312 atatcttctccatacactctca 12529333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 35841810 - 35841689
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||| |||| |||  ||||| |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  35841810 caaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 35841711  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  35841710 atatcttctccatacactctca 35841689  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 29282638 - 29282712
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29282712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 49220633 - 49220707
Alignment:
Q  181 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 255  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 49220707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 29282466 - 29282587
Alignment:
Q  27 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 126  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  29282466 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29282565  T
Q  127 atattttctccatacacgctca 148  Q
    |||| |||||||||||| ||||    
T  29282566 atatcttctccatacactctca 29282587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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