View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15659_high_34 (Length: 319)
Name: NF15659_high_34
Description: NF15659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15659_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 36608492 - 36608751
Alignment:
| Q |
18 |
attaattggcagcttcaataatctaaaccatattgatagattaagtgattatttctcaatttgcaatctaactttcggtgcaatttatatgctcatttca |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36608492 |
attaattggcagcttcaatcatctaaaccatattgacagattaagtgattatttctcaatttgcaatctaactttcgatgcaatttatatgctcatttca |
36608591 |
T |
|
| Q |
118 |
aacaaaacatactgatagggaaaagcttagttctacaaaacaaattaacatacataggtataacatgaattatacgtatcagaccttatggtatattgca |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608592 |
aacaaaacatactgatagagaaaagcttagttctacaaagcaaattaacatacatacgtataacatgaattatacgtatcagaccttatggtatattgca |
36608691 |
T |
|
| Q |
218 |
tctacattttttagtaaaaagtgcaggtacagttttgagctatatatgatccgtgcggca |
277 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36608692 |
tctacattttttaataaaaagtgcaggtacagttttgagctatatatgacccgtgcggca |
36608751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 13601073 - 13600923
Alignment:
| Q |
104 |
atatgctcatttcaaacaaaacatactgatagggaaaagcttagttctacaaaacaaattaacatacataggtataacatgaattatacgtatcagacct |
203 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| ||||||| | | ||| ||||||||||||||||||| |||||||||| || | || ||||| |
|
|
| T |
13601073 |
atatgctcatttcatacaaaacatagtgacaggtaaaagctaacatttactaaacaaattaacatacatacatataacatgagttct-tttaatggacct |
13600975 |
T |
|
| Q |
204 |
tatggtatattgcatctacattttttagtaaaaagtgcaggtacagttttga |
255 |
Q |
| |
|
|||| | ||| ||| ||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
13600974 |
tatgatctatcgcacctatattttttaataaaaagtgcaggtaatgttttga |
13600923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 40966379 - 40966437
Alignment:
| Q |
219 |
ctacattttttagtaaaaagtgcaggtacagttttgagctatatatgatccgtgcggca |
277 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
40966379 |
ctacattttttaataaaaagtgcaggtaatgttttgaactatatatgacccgtgcggca |
40966437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 277
Target Start/End: Original strand, 21981061 - 21981234
Alignment:
| Q |
103 |
tatatgctcatttcaaacaaaacatactgatagggaaaagcttagttctacaaaacaaattaacatacataggtataacatgaattatacgtatcagacc |
202 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||| ||| |||||| |||||||||||| |||||| ||||||||||| || | || |||||| |
|
|
| T |
21981061 |
tatatgctcattttaaacaaaacatattgatagcgaaaaacttttttctactaaacaaattaacttacatacgtataacatgagttct-tttaacagacc |
21981159 |
T |
|
| Q |
203 |
ttatggtatattgcatctacattttttagtaaaaagtgcaggtacagttttgagctatatatgatccgtgcggca |
277 |
Q |
| |
|
||||| |||||| || ||| |||||||| ||||||||||||||| ||||||| |||| ||||| |||||||||| |
|
|
| T |
21981160 |
ttatgttatattacacctatattttttaataaaaagtgcaggtaatgttttgaactatctatgacccgtgcggca |
21981234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 278
Target Start/End: Original strand, 3006525 - 3006699
Alignment:
| Q |
103 |
tatatgctcatttcaaacaaaacatactgatagggaaaagcttagttctacaaaacaaattaacatacataggtataacatgaattatacgtatcagacc |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || || | |||||||| |||| ||||||||||||||||||| |||||| |||| |||| || |||||| |
|
|
| T |
3006525 |
tatatgctcatttcaaacaaaacatacagagagcggaaagcttatttctcataaacaaattaacatacatacgtataatatgagttat-tttaacagacc |
3006623 |
T |
|
| Q |
203 |
ttatggtatattgcatctacattttttagtaaaaagtgcaggtacagttttgagctatatatgatccgtgcggcaa |
278 |
Q |
| |
|
||||| ||||| ||| ||| |||||||| ||||||||||||||| |||||| |||||||||| | ||||||||| |
|
|
| T |
3006624 |
ttatgatatatcgcacctatattttttaataaaaagtgcaggtaatgttttgtactatatatgacctgtgcggcaa |
3006699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 277
Target Start/End: Complemental strand, 4157944 - 4157772
Alignment:
| Q |
104 |
atatgctcatttcaaacaaaacatactgatagggaaaagcttagttctacaaaacaaattaacatacataggtataacatgaattatacgtatcagacct |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | ||||| |||||||||||| |||||| ||||||||||| || | || ||||||| |
|
|
| T |
4157944 |
atatgctcatttcaaagaaaacatactgatagcaaaaagctaatttctattaaacaaattaacttacatacgtataacatgagttct-tttaacagacct |
4157846 |
T |
|
| Q |
204 |
tatggtatattgcatctacattttttagtaaaaagtgcaggtacagttttgagctatatatgatccgtgcggca |
277 |
Q |
| |
|
|||| |||||| || ||| ||| |||| |||||||||||| || ||||||| |||||||||| |||||||||| |
|
|
| T |
4157845 |
tatgatatattacacctatattgtttaataaaaagtgcagataatgttttgaactatatatgacccgtgcggca |
4157772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 23408380 - 23408230
Alignment:
| Q |
104 |
atatgctcatttcaaacaaaacatactgatagggaaaagcttagttctacaaaacaaattaacatacataggtataacatgaattatacgtatcagacct |
203 |
Q |
| |
|
||||| |||||||| |||||||||| ||| ||| ||||||| | ||||| ||||||||||||||||||| |||||| |||| || | || | ||||| |
|
|
| T |
23408380 |
atatgatcatttcatacaaaacatagtgacaggtaaaagctaacatctactaaacaaattaacatacatacgtataatatgagttct-tttaacggacct |
23408282 |
T |
|
| Q |
204 |
tatggtatattgcatctacattttttagtaaaaagtgcaggtacagttttga |
255 |
Q |
| |
|
|||| ||||| ||| ||| |||||||| ||||||||| ||||| ||||||| |
|
|
| T |
23408281 |
tatgatatatcgcacctatattttttaataaaaagtgtaggtaatgttttga |
23408230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University